Strain Fitness in Dechlorosoma suillum PS around Dsui_3465

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3463 and Dsui_3464 are separated by 2 nucleotidesDsui_3464 and Dsui_3465 are separated by 143 nucleotidesDsui_3465 and Dsui_3466 are separated by 19 nucleotidesDsui_3466 and Dsui_3467 overlap by 8 nucleotides Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037 _3463 Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831 _3464 Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807 _3465 Dsui_3466: Dsui_3466 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,729,827 to 3,730,186 _3466 Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525 _3467 Position (kb) 3727 3728 3729 3730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3727.026 kb on + strandat 3727.104 kb on - strandat 3727.578 kb on + strand, within Dsui_3464at 3727.620 kb on + strand, within Dsui_3464at 3727.632 kb on + strand, within Dsui_3464at 3727.638 kb on + strandat 3727.665 kb on + strand, within Dsui_3464at 3727.680 kb on - strand, within Dsui_3464at 3727.711 kb on - strand, within Dsui_3464at 3727.752 kb on + strandat 3727.789 kb on + strandat 3727.927 kb on - strandat 3728.253 kb on + strand, within Dsui_3465at 3728.372 kb on + strand, within Dsui_3465at 3728.393 kb on - strandat 3728.401 kb on - strand, within Dsui_3465at 3728.419 kb on + strandat 3728.428 kb on + strandat 3728.546 kb on + strand, within Dsui_3465at 3728.976 kb on + strand, within Dsui_3465at 3728.982 kb on + strandat 3729.047 kb on + strand, within Dsui_3465at 3729.047 kb on + strand, within Dsui_3465at 3729.047 kb on + strand, within Dsui_3465at 3729.065 kb on - strandat 3729.156 kb on - strand, within Dsui_3465at 3729.263 kb on + strand, within Dsui_3465at 3729.268 kb on + strand, within Dsui_3465at 3729.281 kb on + strand, within Dsui_3465at 3729.291 kb on + strand, within Dsui_3465at 3729.433 kb on - strandat 3729.466 kb on - strandat 3729.664 kb on + strandat 3729.809 kb on - strandat 3729.852 kb on + strandat 3730.029 kb on - strandat 3730.250 kb on + strandat 3730.251 kb on + strandat 3730.275 kb on - strandat 3730.508 kb on - strand, within Dsui_3467at 3730.680 kb on - strandat 3730.691 kb on + strandat 3730.783 kb on + strand, within Dsui_3467

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,727,026 + -2.1
3,727,104 - -0.5
3,727,578 + Dsui_3464 0.68 -0.5
3,727,620 + Dsui_3464 0.73 -1.1
3,727,632 + Dsui_3464 0.75 -2.1
3,727,638 + -0.5
3,727,665 + Dsui_3464 0.79 -1.5
3,727,680 - Dsui_3464 0.81 -0.5
3,727,711 - Dsui_3464 0.85 +0.5
3,727,752 + -1.1
3,727,789 + +0.5
3,727,927 - -1.8
3,728,253 + Dsui_3465 0.15 -3.1
3,728,372 + Dsui_3465 0.22 -1.5
3,728,393 - +0.5
3,728,401 - Dsui_3465 0.23 -2.7
3,728,419 + -1.8
3,728,428 + +0.5
3,728,546 + Dsui_3465 0.31 -2.3
3,728,976 + Dsui_3465 0.55 -1.1
3,728,982 + +2.1
3,729,047 + Dsui_3465 0.58 +0.5
3,729,047 + Dsui_3465 0.58 -1.5
3,729,047 + Dsui_3465 0.58 -0.5
3,729,065 - +0.5
3,729,156 - Dsui_3465 0.64 -1.8
3,729,263 + Dsui_3465 0.70 -1.5
3,729,268 + Dsui_3465 0.71 -1.5
3,729,281 + Dsui_3465 0.71 -1.1
3,729,291 + Dsui_3465 0.72 -2.3
3,729,433 - +0.5
3,729,466 - +0.5
3,729,664 + -0.5
3,729,809 - +0.5
3,729,852 + -0.5
3,730,029 - -1.5
3,730,250 + -0.5
3,730,251 + -0.5
3,730,275 - +0.5
3,730,508 - Dsui_3467 0.24 +0.5
3,730,680 - -1.1
3,730,691 + +0.5
3,730,783 + Dsui_3467 0.45 -1.5

Or see this region's nucleotide sequence