Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3463 and Dsui_3464 are separated by 2 nucleotides Dsui_3464 and Dsui_3465 are separated by 143 nucleotides Dsui_3465 and Dsui_3466 are separated by 19 nucleotides Dsui_3466 and Dsui_3467 overlap by 8 nucleotides
Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037
_3463
Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831
_3464
Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807
_3465
Dsui_3466: Dsui_3466 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,729,827 to 3,730,186
_3466
Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525
_3467
Position (kb)
3727
3728
3729
3730 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3727.026 kb on + strand at 3727.104 kb on - strand at 3727.578 kb on + strand, within Dsui_3464 at 3727.620 kb on + strand, within Dsui_3464 at 3727.632 kb on + strand, within Dsui_3464 at 3727.638 kb on + strand at 3727.665 kb on + strand, within Dsui_3464 at 3727.680 kb on - strand, within Dsui_3464 at 3727.711 kb on - strand, within Dsui_3464 at 3727.752 kb on + strand at 3727.789 kb on + strand at 3727.927 kb on - strand at 3728.253 kb on + strand, within Dsui_3465 at 3728.372 kb on + strand, within Dsui_3465 at 3728.393 kb on - strand at 3728.401 kb on - strand, within Dsui_3465 at 3728.419 kb on + strand at 3728.428 kb on + strand at 3728.546 kb on + strand, within Dsui_3465 at 3728.976 kb on + strand, within Dsui_3465 at 3728.982 kb on + strand at 3729.047 kb on + strand, within Dsui_3465 at 3729.047 kb on + strand, within Dsui_3465 at 3729.047 kb on + strand, within Dsui_3465 at 3729.065 kb on - strand at 3729.156 kb on - strand, within Dsui_3465 at 3729.263 kb on + strand, within Dsui_3465 at 3729.268 kb on + strand, within Dsui_3465 at 3729.281 kb on + strand, within Dsui_3465 at 3729.291 kb on + strand, within Dsui_3465 at 3729.433 kb on - strand at 3729.466 kb on - strand at 3729.664 kb on + strand at 3729.809 kb on - strand at 3729.852 kb on + strand at 3730.029 kb on - strand at 3730.250 kb on + strand at 3730.251 kb on + strand at 3730.275 kb on - strand at 3730.508 kb on - strand, within Dsui_3467 at 3730.680 kb on - strand at 3730.691 kb on + strand at 3730.783 kb on + strand, within Dsui_3467
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,727,026 + -2.1 3,727,104 - -0.5 3,727,578 + Dsui_3464 0.68 -0.5 3,727,620 + Dsui_3464 0.73 -1.1 3,727,632 + Dsui_3464 0.75 -2.1 3,727,638 + -0.5 3,727,665 + Dsui_3464 0.79 -1.5 3,727,680 - Dsui_3464 0.81 -0.5 3,727,711 - Dsui_3464 0.85 +0.5 3,727,752 + -1.1 3,727,789 + +0.5 3,727,927 - -1.8 3,728,253 + Dsui_3465 0.15 -3.1 3,728,372 + Dsui_3465 0.22 -1.5 3,728,393 - +0.5 3,728,401 - Dsui_3465 0.23 -2.7 3,728,419 + -1.8 3,728,428 + +0.5 3,728,546 + Dsui_3465 0.31 -2.3 3,728,976 + Dsui_3465 0.55 -1.1 3,728,982 + +2.1 3,729,047 + Dsui_3465 0.58 +0.5 3,729,047 + Dsui_3465 0.58 -1.5 3,729,047 + Dsui_3465 0.58 -0.5 3,729,065 - +0.5 3,729,156 - Dsui_3465 0.64 -1.8 3,729,263 + Dsui_3465 0.70 -1.5 3,729,268 + Dsui_3465 0.71 -1.5 3,729,281 + Dsui_3465 0.71 -1.1 3,729,291 + Dsui_3465 0.72 -2.3 3,729,433 - +0.5 3,729,466 - +0.5 3,729,664 + -0.5 3,729,809 - +0.5 3,729,852 + -0.5 3,730,029 - -1.5 3,730,250 + -0.5 3,730,251 + -0.5 3,730,275 - +0.5 3,730,508 - Dsui_3467 0.24 +0.5 3,730,680 - -1.1 3,730,691 + +0.5 3,730,783 + Dsui_3467 0.45 -1.5
Or see this region's nucleotide sequence