Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3453 and Dsui_3454 are separated by 85 nucleotides Dsui_3454 and Dsui_3455 are separated by 76 nucleotides Dsui_3455 and Dsui_3456 are separated by 188 nucleotides Dsui_3456 and Dsui_3457 are separated by 74 nucleotides
Dsui_3453: Dsui_3453 - cation diffusion facilitator family transporter, at 3,713,933 to 3,714,841
_3453
Dsui_3454: Dsui_3454 - phospholipid-binding protein, at 3,714,927 to 3,715,343
_3454
Dsui_3455: Dsui_3455 - HD-GYP domain-containing protein, at 3,715,420 to 3,718,395
_3455
Dsui_3456: Dsui_3456 - hypothetical protein, at 3,718,584 to 3,718,961
_3456
Dsui_3457: Dsui_3457 - K+ transporter, at 3,719,036 to 3,720,919
_3457
Position (kb)
3715
3716
3717
3718
3719 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3714.477 kb on + strand, within Dsui_3453 at 3714.628 kb on + strand, within Dsui_3453 at 3714.821 kb on + strand at 3715.036 kb on + strand, within Dsui_3454 at 3715.180 kb on - strand, within Dsui_3454 at 3715.326 kb on + strand at 3715.332 kb on + strand at 3715.458 kb on + strand at 3715.492 kb on + strand at 3715.492 kb on + strand at 3715.497 kb on + strand at 3715.524 kb on + strand at 3715.524 kb on + strand at 3715.568 kb on - strand at 3715.582 kb on - strand at 3715.617 kb on - strand at 3715.654 kb on - strand at 3715.747 kb on + strand, within Dsui_3455 at 3715.854 kb on + strand, within Dsui_3455 at 3716.042 kb on + strand, within Dsui_3455 at 3716.145 kb on + strand, within Dsui_3455 at 3716.217 kb on - strand at 3716.280 kb on + strand at 3716.361 kb on + strand, within Dsui_3455 at 3716.398 kb on + strand at 3717.057 kb on - strand, within Dsui_3455 at 3717.116 kb on - strand, within Dsui_3455 at 3717.156 kb on - strand at 3717.196 kb on + strand at 3717.321 kb on + strand, within Dsui_3455 at 3717.329 kb on - strand, within Dsui_3455 at 3717.449 kb on + strand at 3717.661 kb on - strand, within Dsui_3455 at 3717.795 kb on - strand at 3717.865 kb on - strand, within Dsui_3455 at 3717.896 kb on - strand, within Dsui_3455 at 3718.144 kb on + strand at 3718.240 kb on + strand at 3718.248 kb on - strand at 3718.318 kb on + strand at 3718.319 kb on - strand at 3718.351 kb on - strand at 3718.351 kb on - strand at 3718.351 kb on - strand at 3718.433 kb on + strand at 3718.433 kb on + strand at 3718.440 kb on + strand at 3718.563 kb on - strand at 3718.718 kb on + strand, within Dsui_3456 at 3718.810 kb on + strand, within Dsui_3456 at 3718.810 kb on + strand, within Dsui_3456 at 3718.830 kb on - strand, within Dsui_3456 at 3718.867 kb on + strand, within Dsui_3456 at 3719.033 kb on + strand at 3719.052 kb on - strand at 3719.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,714,477 + Dsui_3453 0.60 -0.4 3,714,628 + Dsui_3453 0.76 -0.1 3,714,821 + +1.2 3,715,036 + Dsui_3454 0.26 +0.5 3,715,180 - Dsui_3454 0.61 +1.5 3,715,326 + +0.5 3,715,332 + +0.5 3,715,458 + +0.5 3,715,492 + -0.5 3,715,492 + -2.5 3,715,497 + +0.5 3,715,524 + +0.5 3,715,524 + -2.1 3,715,568 - +0.5 3,715,582 - -1.1 3,715,617 - -1.5 3,715,654 - -1.1 3,715,747 + Dsui_3455 0.11 -0.5 3,715,854 + Dsui_3455 0.15 -1.1 3,716,042 + Dsui_3455 0.21 -2.7 3,716,145 + Dsui_3455 0.24 +0.5 3,716,217 - -0.5 3,716,280 + +0.5 3,716,361 + Dsui_3455 0.32 -3.1 3,716,398 + +0.5 3,717,057 - Dsui_3455 0.55 +0.5 3,717,116 - Dsui_3455 0.57 -1.5 3,717,156 - +0.5 3,717,196 + +0.5 3,717,321 + Dsui_3455 0.64 -2.1 3,717,329 - Dsui_3455 0.64 -0.5 3,717,449 + +0.5 3,717,661 - Dsui_3455 0.75 +0.5 3,717,795 - -0.5 3,717,865 - Dsui_3455 0.82 -0.8 3,717,896 - Dsui_3455 0.83 -1.1 3,718,144 + +0.5 3,718,240 + -0.5 3,718,248 - +0.5 3,718,318 + -2.3 3,718,319 - -1.1 3,718,351 - -0.5 3,718,351 - -1.1 3,718,351 - +0.5 3,718,433 + -2.1 3,718,433 + -3.2 3,718,440 + -1.1 3,718,563 - -0.5 3,718,718 + Dsui_3456 0.35 -0.5 3,718,810 + Dsui_3456 0.60 -1.8 3,718,810 + Dsui_3456 0.60 +1.7 3,718,830 - Dsui_3456 0.65 -1.5 3,718,867 + Dsui_3456 0.75 -0.5 3,719,033 + +0.5 3,719,052 - -0.7 3,719,223 - +0.4
Or see this region's nucleotide sequence