Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3406 and Dsui_3407 are separated by 121 nucleotides Dsui_3407 and Dsui_3408 are separated by 84 nucleotides Dsui_3408 and Dsui_3409 are separated by 135 nucleotides
Dsui_3406: Dsui_3406 - DNA/RNA helicase, superfamily II, at 3,659,279 to 3,660,703
_3406
Dsui_3407: Dsui_3407 - methylase of polypeptide chain release factors, at 3,660,825 to 3,661,949
_3407
Dsui_3408: Dsui_3408 - hypothetical protein, at 3,662,034 to 3,662,444
_3408
Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146
_3409
Position (kb)
3660
3661
3662 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3659.872 kb on - strand, within Dsui_3406 at 3659.979 kb on + strand, within Dsui_3406 at 3660.020 kb on + strand, within Dsui_3406 at 3660.052 kb on + strand, within Dsui_3406 at 3660.052 kb on + strand, within Dsui_3406 at 3660.144 kb on - strand, within Dsui_3406 at 3660.144 kb on - strand, within Dsui_3406 at 3660.186 kb on + strand, within Dsui_3406 at 3660.206 kb on + strand, within Dsui_3406 at 3660.240 kb on + strand, within Dsui_3406 at 3660.248 kb on - strand, within Dsui_3406 at 3660.258 kb on + strand, within Dsui_3406 at 3660.328 kb on + strand, within Dsui_3406 at 3660.407 kb on - strand, within Dsui_3406 at 3660.582 kb on - strand at 3660.615 kb on - strand at 3660.677 kb on + strand at 3660.735 kb on - strand at 3660.861 kb on + strand at 3660.872 kb on + strand at 3660.953 kb on + strand, within Dsui_3407 at 3660.979 kb on - strand, within Dsui_3407 at 3661.014 kb on + strand, within Dsui_3407 at 3661.043 kb on + strand, within Dsui_3407 at 3661.050 kb on + strand, within Dsui_3407 at 3661.051 kb on - strand, within Dsui_3407 at 3661.074 kb on + strand, within Dsui_3407 at 3661.110 kb on + strand, within Dsui_3407 at 3661.118 kb on - strand at 3661.123 kb on - strand at 3661.138 kb on - strand at 3661.383 kb on - strand, within Dsui_3407 at 3661.384 kb on - strand, within Dsui_3407 at 3661.483 kb on + strand, within Dsui_3407 at 3661.497 kb on + strand, within Dsui_3407 at 3661.520 kb on - strand, within Dsui_3407 at 3661.550 kb on - strand at 3661.569 kb on - strand at 3661.638 kb on + strand, within Dsui_3407 at 3661.756 kb on + strand, within Dsui_3407 at 3661.865 kb on + strand at 3661.924 kb on - strand at 3662.017 kb on - strand at 3662.071 kb on - strand at 3662.087 kb on - strand, within Dsui_3408 at 3662.096 kb on - strand at 3662.183 kb on + strand, within Dsui_3408 at 3662.191 kb on - strand, within Dsui_3408 at 3662.192 kb on - strand, within Dsui_3408 at 3662.218 kb on + strand, within Dsui_3408 at 3662.279 kb on - strand, within Dsui_3408 at 3662.351 kb on - strand, within Dsui_3408 at 3662.363 kb on - strand, within Dsui_3408 at 3662.365 kb on - strand, within Dsui_3408 at 3662.389 kb on + strand, within Dsui_3408 at 3662.420 kb on - strand at 3662.430 kb on - strand at 3662.457 kb on + strand at 3662.621 kb on - strand at 3662.669 kb on - strand at 3662.734 kb on + strand at 3662.734 kb on + strand at 3662.756 kb on - strand, within Dsui_3409 at 3662.768 kb on + strand, within Dsui_3409 at 3662.836 kb on + strand, within Dsui_3409 at 3662.844 kb on - strand, within Dsui_3409 at 3662.844 kb on - strand at 3662.879 kb on - strand, within Dsui_3409 at 3662.908 kb on + strand, within Dsui_3409 at 3662.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,659,872 - Dsui_3406 0.42 -1.1 3,659,979 + Dsui_3406 0.49 -0.2 3,660,020 + Dsui_3406 0.52 -0.0 3,660,052 + Dsui_3406 0.54 -0.3 3,660,052 + Dsui_3406 0.54 -0.4 3,660,144 - Dsui_3406 0.61 -1.8 3,660,144 - Dsui_3406 0.61 +0.5 3,660,186 + Dsui_3406 0.64 -0.2 3,660,206 + Dsui_3406 0.65 -0.1 3,660,240 + Dsui_3406 0.67 -0.4 3,660,248 - Dsui_3406 0.68 -0.5 3,660,258 + Dsui_3406 0.69 -0.2 3,660,328 + Dsui_3406 0.74 -0.2 3,660,407 - Dsui_3406 0.79 -0.5 3,660,582 - +0.5 3,660,615 - +0.5 3,660,677 + +0.1 3,660,735 - -1.5 3,660,861 + -0.6 3,660,872 + -1.1 3,660,953 + Dsui_3407 0.11 +0.5 3,660,979 - Dsui_3407 0.14 -2.3 3,661,014 + Dsui_3407 0.17 -0.8 3,661,043 + Dsui_3407 0.19 -0.1 3,661,050 + Dsui_3407 0.20 -0.9 3,661,051 - Dsui_3407 0.20 -2.5 3,661,074 + Dsui_3407 0.22 -1.3 3,661,110 + Dsui_3407 0.25 +0.9 3,661,118 - -1.1 3,661,123 - -0.5 3,661,138 - +0.5 3,661,383 - Dsui_3407 0.50 -0.5 3,661,384 - Dsui_3407 0.50 -1.1 3,661,483 + Dsui_3407 0.58 -0.2 3,661,497 + Dsui_3407 0.60 -3.3 3,661,520 - Dsui_3407 0.62 -1.5 3,661,550 - +0.5 3,661,569 - +0.5 3,661,638 + Dsui_3407 0.72 -0.9 3,661,756 + Dsui_3407 0.83 -2.0 3,661,865 + -0.2 3,661,924 - -0.5 3,662,017 - -1.1 3,662,071 - -1.2 3,662,087 - Dsui_3408 0.13 +0.5 3,662,096 - +1.1 3,662,183 + Dsui_3408 0.36 -0.5 3,662,191 - Dsui_3408 0.38 -1.1 3,662,192 - Dsui_3408 0.38 -1.1 3,662,218 + Dsui_3408 0.45 -2.1 3,662,279 - Dsui_3408 0.60 -2.5 3,662,351 - Dsui_3408 0.77 +0.5 3,662,363 - Dsui_3408 0.80 -2.3 3,662,365 - Dsui_3408 0.81 -1.1 3,662,389 + Dsui_3408 0.86 +0.5 3,662,420 - -1.3 3,662,430 - -0.5 3,662,457 + -0.5 3,662,621 - -0.5 3,662,669 - +0.5 3,662,734 + -0.5 3,662,734 + +0.5 3,662,756 - Dsui_3409 0.31 -0.5 3,662,768 + Dsui_3409 0.33 -2.3 3,662,836 + Dsui_3409 0.45 -0.5 3,662,844 - Dsui_3409 0.47 -0.5 3,662,844 - -1.1 3,662,879 - Dsui_3409 0.53 +0.5 3,662,908 + Dsui_3409 0.58 +0.5 3,662,922 - +0.5
Or see this region's nucleotide sequence