Strain Fitness in Dechlorosoma suillum PS around Dsui_3407

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3406 and Dsui_3407 are separated by 121 nucleotidesDsui_3407 and Dsui_3408 are separated by 84 nucleotidesDsui_3408 and Dsui_3409 are separated by 135 nucleotides Dsui_3406: Dsui_3406 - DNA/RNA helicase, superfamily II, at 3,659,279 to 3,660,703 _3406 Dsui_3407: Dsui_3407 - methylase of polypeptide chain release factors, at 3,660,825 to 3,661,949 _3407 Dsui_3408: Dsui_3408 - hypothetical protein, at 3,662,034 to 3,662,444 _3408 Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146 _3409 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -3 -2 -1 0 1at 3659.872 kb on - strand, within Dsui_3406at 3659.979 kb on + strand, within Dsui_3406at 3660.020 kb on + strand, within Dsui_3406at 3660.052 kb on + strand, within Dsui_3406at 3660.052 kb on + strand, within Dsui_3406at 3660.144 kb on - strand, within Dsui_3406at 3660.144 kb on - strand, within Dsui_3406at 3660.186 kb on + strand, within Dsui_3406at 3660.206 kb on + strand, within Dsui_3406at 3660.240 kb on + strand, within Dsui_3406at 3660.248 kb on - strand, within Dsui_3406at 3660.258 kb on + strand, within Dsui_3406at 3660.328 kb on + strand, within Dsui_3406at 3660.407 kb on - strand, within Dsui_3406at 3660.582 kb on - strandat 3660.615 kb on - strandat 3660.677 kb on + strandat 3660.735 kb on - strandat 3660.861 kb on + strandat 3660.872 kb on + strandat 3660.953 kb on + strand, within Dsui_3407at 3660.979 kb on - strand, within Dsui_3407at 3661.014 kb on + strand, within Dsui_3407at 3661.043 kb on + strand, within Dsui_3407at 3661.050 kb on + strand, within Dsui_3407at 3661.051 kb on - strand, within Dsui_3407at 3661.074 kb on + strand, within Dsui_3407at 3661.110 kb on + strand, within Dsui_3407at 3661.118 kb on - strandat 3661.123 kb on - strandat 3661.138 kb on - strandat 3661.383 kb on - strand, within Dsui_3407at 3661.384 kb on - strand, within Dsui_3407at 3661.483 kb on + strand, within Dsui_3407at 3661.497 kb on + strand, within Dsui_3407at 3661.520 kb on - strand, within Dsui_3407at 3661.550 kb on - strandat 3661.569 kb on - strandat 3661.638 kb on + strand, within Dsui_3407at 3661.756 kb on + strand, within Dsui_3407at 3661.865 kb on + strandat 3661.924 kb on - strandat 3662.017 kb on - strandat 3662.071 kb on - strandat 3662.087 kb on - strand, within Dsui_3408at 3662.096 kb on - strandat 3662.183 kb on + strand, within Dsui_3408at 3662.191 kb on - strand, within Dsui_3408at 3662.192 kb on - strand, within Dsui_3408at 3662.218 kb on + strand, within Dsui_3408at 3662.279 kb on - strand, within Dsui_3408at 3662.351 kb on - strand, within Dsui_3408at 3662.363 kb on - strand, within Dsui_3408at 3662.365 kb on - strand, within Dsui_3408at 3662.389 kb on + strand, within Dsui_3408at 3662.420 kb on - strandat 3662.430 kb on - strandat 3662.457 kb on + strandat 3662.621 kb on - strandat 3662.669 kb on - strandat 3662.734 kb on + strandat 3662.734 kb on + strandat 3662.756 kb on - strand, within Dsui_3409at 3662.768 kb on + strand, within Dsui_3409at 3662.836 kb on + strand, within Dsui_3409at 3662.844 kb on - strand, within Dsui_3409at 3662.844 kb on - strandat 3662.879 kb on - strand, within Dsui_3409at 3662.908 kb on + strand, within Dsui_3409at 3662.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,659,872 - Dsui_3406 0.42 -1.1
3,659,979 + Dsui_3406 0.49 -0.2
3,660,020 + Dsui_3406 0.52 -0.0
3,660,052 + Dsui_3406 0.54 -0.3
3,660,052 + Dsui_3406 0.54 -0.4
3,660,144 - Dsui_3406 0.61 -1.8
3,660,144 - Dsui_3406 0.61 +0.5
3,660,186 + Dsui_3406 0.64 -0.2
3,660,206 + Dsui_3406 0.65 -0.1
3,660,240 + Dsui_3406 0.67 -0.4
3,660,248 - Dsui_3406 0.68 -0.5
3,660,258 + Dsui_3406 0.69 -0.2
3,660,328 + Dsui_3406 0.74 -0.2
3,660,407 - Dsui_3406 0.79 -0.5
3,660,582 - +0.5
3,660,615 - +0.5
3,660,677 + +0.1
3,660,735 - -1.5
3,660,861 + -0.6
3,660,872 + -1.1
3,660,953 + Dsui_3407 0.11 +0.5
3,660,979 - Dsui_3407 0.14 -2.3
3,661,014 + Dsui_3407 0.17 -0.8
3,661,043 + Dsui_3407 0.19 -0.1
3,661,050 + Dsui_3407 0.20 -0.9
3,661,051 - Dsui_3407 0.20 -2.5
3,661,074 + Dsui_3407 0.22 -1.3
3,661,110 + Dsui_3407 0.25 +0.9
3,661,118 - -1.1
3,661,123 - -0.5
3,661,138 - +0.5
3,661,383 - Dsui_3407 0.50 -0.5
3,661,384 - Dsui_3407 0.50 -1.1
3,661,483 + Dsui_3407 0.58 -0.2
3,661,497 + Dsui_3407 0.60 -3.3
3,661,520 - Dsui_3407 0.62 -1.5
3,661,550 - +0.5
3,661,569 - +0.5
3,661,638 + Dsui_3407 0.72 -0.9
3,661,756 + Dsui_3407 0.83 -2.0
3,661,865 + -0.2
3,661,924 - -0.5
3,662,017 - -1.1
3,662,071 - -1.2
3,662,087 - Dsui_3408 0.13 +0.5
3,662,096 - +1.1
3,662,183 + Dsui_3408 0.36 -0.5
3,662,191 - Dsui_3408 0.38 -1.1
3,662,192 - Dsui_3408 0.38 -1.1
3,662,218 + Dsui_3408 0.45 -2.1
3,662,279 - Dsui_3408 0.60 -2.5
3,662,351 - Dsui_3408 0.77 +0.5
3,662,363 - Dsui_3408 0.80 -2.3
3,662,365 - Dsui_3408 0.81 -1.1
3,662,389 + Dsui_3408 0.86 +0.5
3,662,420 - -1.3
3,662,430 - -0.5
3,662,457 + -0.5
3,662,621 - -0.5
3,662,669 - +0.5
3,662,734 + -0.5
3,662,734 + +0.5
3,662,756 - Dsui_3409 0.31 -0.5
3,662,768 + Dsui_3409 0.33 -2.3
3,662,836 + Dsui_3409 0.45 -0.5
3,662,844 - Dsui_3409 0.47 -0.5
3,662,844 - -1.1
3,662,879 - Dsui_3409 0.53 +0.5
3,662,908 + Dsui_3409 0.58 +0.5
3,662,922 - +0.5

Or see this region's nucleotide sequence