Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3229 and Dsui_3230 are separated by 2 nucleotides Dsui_3230 and Dsui_3231 are separated by 66 nucleotides
Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590
_3229
Dsui_3230: Dsui_3230 - hypothetical protein, at 3,468,593 to 3,471,172
_3230
Dsui_3231: Dsui_3231 - hypothetical protein, at 3,471,239 to 3,474,592
_3231
Position (kb)
3468
3469
3470
3471
3472 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3467.617 kb on - strand at 3467.660 kb on - strand at 3467.667 kb on + strand at 3467.714 kb on + strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.763 kb on - strand, within Dsui_3229 at 3467.805 kb on + strand at 3467.812 kb on - strand, within Dsui_3229 at 3467.820 kb on + strand at 3467.828 kb on - strand, within Dsui_3229 at 3467.950 kb on + strand at 3468.133 kb on - strand, within Dsui_3229 at 3468.149 kb on + strand at 3468.861 kb on - strand, within Dsui_3230 at 3469.179 kb on + strand at 3469.206 kb on - strand, within Dsui_3230 at 3469.233 kb on - strand, within Dsui_3230 at 3469.260 kb on - strand, within Dsui_3230 at 3469.337 kb on + strand at 3469.414 kb on - strand, within Dsui_3230 at 3469.552 kb on - strand at 3469.576 kb on + strand, within Dsui_3230 at 3469.632 kb on - strand, within Dsui_3230 at 3469.632 kb on - strand, within Dsui_3230 at 3469.634 kb on - strand, within Dsui_3230 at 3469.695 kb on - strand, within Dsui_3230 at 3469.758 kb on - strand, within Dsui_3230 at 3469.836 kb on + strand at 3469.844 kb on - strand at 3469.994 kb on - strand, within Dsui_3230 at 3469.994 kb on - strand at 3470.131 kb on - strand, within Dsui_3230 at 3470.292 kb on - strand, within Dsui_3230 at 3470.331 kb on - strand, within Dsui_3230 at 3470.413 kb on + strand at 3470.472 kb on - strand, within Dsui_3230 at 3470.477 kb on - strand, within Dsui_3230 at 3470.583 kb on - strand, within Dsui_3230 at 3470.710 kb on - strand, within Dsui_3230 at 3470.760 kb on - strand, within Dsui_3230 at 3470.924 kb on - strand at 3470.973 kb on + strand at 3470.981 kb on - strand at 3471.041 kb on - strand at 3471.154 kb on + strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.333 kb on - strand at 3471.353 kb on - strand at 3471.433 kb on - strand at 3471.485 kb on + strand at 3471.493 kb on - strand at 3471.602 kb on - strand at 3471.718 kb on - strand at 3471.734 kb on + strand at 3471.901 kb on + strand at 3471.901 kb on + strand, within Dsui_3231
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,467,617 - -0.5 3,467,660 - -2.8 3,467,667 + +0.5 3,467,714 + -1.1 3,467,722 - +0.5 3,467,722 - +0.5 3,467,722 - -1.3 3,467,763 - Dsui_3229 0.12 +0.5 3,467,805 + -1.1 3,467,812 - Dsui_3229 0.17 -1.1 3,467,820 + -1.1 3,467,828 - Dsui_3229 0.19 -2.7 3,467,950 + +0.5 3,468,133 - Dsui_3229 0.51 -1.9 3,468,149 + +0.5 3,468,861 - Dsui_3230 0.10 -1.7 3,469,179 + -1.1 3,469,206 - Dsui_3230 0.24 +0.0 3,469,233 - Dsui_3230 0.25 -1.9 3,469,260 - Dsui_3230 0.26 -1.6 3,469,337 + -0.6 3,469,414 - Dsui_3230 0.32 -0.6 3,469,552 - -1.6 3,469,576 + Dsui_3230 0.38 -2.4 3,469,632 - Dsui_3230 0.40 -2.6 3,469,632 - Dsui_3230 0.40 -1.9 3,469,634 - Dsui_3230 0.40 -0.7 3,469,695 - Dsui_3230 0.43 -2.1 3,469,758 - Dsui_3230 0.45 -0.6 3,469,836 + -1.1 3,469,844 - +0.4 3,469,994 - Dsui_3230 0.54 -0.1 3,469,994 - +0.4 3,470,131 - Dsui_3230 0.60 -1.1 3,470,292 - Dsui_3230 0.66 -1.1 3,470,331 - Dsui_3230 0.67 -1.7 3,470,413 + +0.4 3,470,472 - Dsui_3230 0.73 -0.6 3,470,477 - Dsui_3230 0.73 -2.1 3,470,583 - Dsui_3230 0.77 -2.7 3,470,710 - Dsui_3230 0.82 -2.1 3,470,760 - Dsui_3230 0.84 -2.1 3,470,924 - -1.1 3,470,973 + +0.4 3,470,981 - +0.9 3,471,041 - -1.1 3,471,154 + +0.4 3,471,245 - -0.1 3,471,245 - -0.1 3,471,245 - -0.7 3,471,333 - -1.1 3,471,353 - +0.4 3,471,433 - -2.7 3,471,485 + +0.4 3,471,493 - -1.1 3,471,602 - +0.4 3,471,718 - +0.4 3,471,734 + -1.1 3,471,901 + +0.4 3,471,901 + Dsui_3231 0.20 -2.4
Or see this region's nucleotide sequence