Strain Fitness in Dechlorosoma suillum PS around Dsui_3120

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3119 and Dsui_3120 are separated by 32 nucleotidesDsui_3120 and Dsui_3121 are separated by 12 nucleotidesDsui_3121 and Dsui_3122 are separated by 227 nucleotides Dsui_3119: Dsui_3119 - nitric oxide reductase activation protein, at 3,340,482 to 3,342,329 _3119 Dsui_3120: Dsui_3120 - cAMP-binding protein, at 3,342,362 to 3,343,102 _3120 Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849 _3121 Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598 _3122 Position (kb) 3342 3343 3344Strain fitness (log2 ratio) -3 -2 -1 0 1at 3341.455 kb on + strandat 3341.634 kb on + strandat 3341.720 kb on + strand, within Dsui_3119at 3341.720 kb on + strand, within Dsui_3119at 3341.727 kb on - strandat 3341.727 kb on - strandat 3341.761 kb on + strand, within Dsui_3119at 3341.769 kb on - strandat 3341.776 kb on + strandat 3341.892 kb on - strandat 3342.070 kb on + strandat 3342.089 kb on - strandat 3342.315 kb on + strandat 3342.367 kb on + strandat 3342.446 kb on + strand, within Dsui_3120at 3342.456 kb on + strand, within Dsui_3120at 3342.641 kb on + strand, within Dsui_3120at 3342.649 kb on - strandat 3342.701 kb on + strand, within Dsui_3120at 3342.701 kb on + strand, within Dsui_3120at 3342.709 kb on - strandat 3342.765 kb on + strand, within Dsui_3120at 3342.863 kb on - strandat 3343.088 kb on - strandat 3343.090 kb on + strandat 3343.104 kb on - strandat 3343.174 kb on - strandat 3343.314 kb on + strand, within Dsui_3121at 3343.320 kb on - strand, within Dsui_3121at 3343.597 kb on + strand, within Dsui_3121at 3343.814 kb on + strandat 3343.942 kb on - strandat 3344.024 kb on - strandat 3344.090 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
3,341,455 + +0.5
3,341,634 + -0.5
3,341,720 + Dsui_3119 0.67 +0.5
3,341,720 + Dsui_3119 0.67 -0.5
3,341,727 - +0.5
3,341,727 - -1.9
3,341,761 + Dsui_3119 0.69 -1.1
3,341,769 - +0.5
3,341,776 + +0.5
3,341,892 - +0.5
3,342,070 + +0.5
3,342,089 - +0.5
3,342,315 + -0.5
3,342,367 + +0.5
3,342,446 + Dsui_3120 0.11 -1.1
3,342,456 + Dsui_3120 0.13 -2.7
3,342,641 + Dsui_3120 0.38 -0.5
3,342,649 - +0.5
3,342,701 + Dsui_3120 0.46 -0.5
3,342,701 + Dsui_3120 0.46 -0.5
3,342,709 - +0.5
3,342,765 + Dsui_3120 0.54 -1.9
3,342,863 - +0.5
3,343,088 - -1.1
3,343,090 + +0.5
3,343,104 - -2.9
3,343,174 - -1.1
3,343,314 + Dsui_3121 0.27 +0.5
3,343,320 - Dsui_3121 0.28 -1.1
3,343,597 + Dsui_3121 0.66 -1.1
3,343,814 + +0.5
3,343,942 - +0.5
3,344,024 - -1.1
3,344,090 - +0.5

Or see this region's nucleotide sequence