Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3119 and Dsui_3120 are separated by 32 nucleotides Dsui_3120 and Dsui_3121 are separated by 12 nucleotides Dsui_3121 and Dsui_3122 are separated by 227 nucleotides
Dsui_3119: Dsui_3119 - nitric oxide reductase activation protein, at 3,340,482 to 3,342,329
_3119
Dsui_3120: Dsui_3120 - cAMP-binding protein, at 3,342,362 to 3,343,102
_3120
Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849
_3121
Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598
_3122
Position (kb)
3342
3343
3344 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3341.455 kb on + strand at 3341.634 kb on + strand at 3341.720 kb on + strand, within Dsui_3119 at 3341.720 kb on + strand, within Dsui_3119 at 3341.727 kb on - strand at 3341.727 kb on - strand at 3341.761 kb on + strand, within Dsui_3119 at 3341.769 kb on - strand at 3341.776 kb on + strand at 3341.892 kb on - strand at 3342.070 kb on + strand at 3342.089 kb on - strand at 3342.315 kb on + strand at 3342.367 kb on + strand at 3342.446 kb on + strand, within Dsui_3120 at 3342.456 kb on + strand, within Dsui_3120 at 3342.641 kb on + strand, within Dsui_3120 at 3342.649 kb on - strand at 3342.701 kb on + strand, within Dsui_3120 at 3342.701 kb on + strand, within Dsui_3120 at 3342.709 kb on - strand at 3342.765 kb on + strand, within Dsui_3120 at 3342.863 kb on - strand at 3343.088 kb on - strand at 3343.090 kb on + strand at 3343.104 kb on - strand at 3343.174 kb on - strand at 3343.314 kb on + strand, within Dsui_3121 at 3343.320 kb on - strand, within Dsui_3121 at 3343.597 kb on + strand, within Dsui_3121 at 3343.814 kb on + strand at 3343.942 kb on - strand at 3344.024 kb on - strand at 3344.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,341,455 + +0.5 3,341,634 + -0.5 3,341,720 + Dsui_3119 0.67 +0.5 3,341,720 + Dsui_3119 0.67 -0.5 3,341,727 - +0.5 3,341,727 - -1.9 3,341,761 + Dsui_3119 0.69 -1.1 3,341,769 - +0.5 3,341,776 + +0.5 3,341,892 - +0.5 3,342,070 + +0.5 3,342,089 - +0.5 3,342,315 + -0.5 3,342,367 + +0.5 3,342,446 + Dsui_3120 0.11 -1.1 3,342,456 + Dsui_3120 0.13 -2.7 3,342,641 + Dsui_3120 0.38 -0.5 3,342,649 - +0.5 3,342,701 + Dsui_3120 0.46 -0.5 3,342,701 + Dsui_3120 0.46 -0.5 3,342,709 - +0.5 3,342,765 + Dsui_3120 0.54 -1.9 3,342,863 - +0.5 3,343,088 - -1.1 3,343,090 + +0.5 3,343,104 - -2.9 3,343,174 - -1.1 3,343,314 + Dsui_3121 0.27 +0.5 3,343,320 - Dsui_3121 0.28 -1.1 3,343,597 + Dsui_3121 0.66 -1.1 3,343,814 + +0.5 3,343,942 - +0.5 3,344,024 - -1.1 3,344,090 - +0.5
Or see this region's nucleotide sequence