Strain Fitness in Dechlorosoma suillum PS around Dsui_2991

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2990 and Dsui_2991 are separated by 2 nucleotidesDsui_2991 and Dsui_2992 are separated by 3 nucleotides Dsui_2990: Dsui_2990 - MoxR-like ATPase, at 3,197,979 to 3,198,827 _2990 Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253 _2991 Dsui_2992: Dsui_2992 - hypothetical protein, at 3,201,257 to 3,202,438 _2992 Position (kb) 3198 3199 3200 3201 3202Strain fitness (log2 ratio) -3 -2 -1 0 1at 3197.873 kb on + strandat 3198.044 kb on - strandat 3198.069 kb on + strand, within Dsui_2990at 3198.074 kb on + strand, within Dsui_2990at 3198.077 kb on - strandat 3198.130 kb on + strand, within Dsui_2990at 3198.138 kb on - strand, within Dsui_2990at 3198.189 kb on - strandat 3198.199 kb on + strand, within Dsui_2990at 3198.315 kb on - strandat 3198.466 kb on + strand, within Dsui_2990at 3198.481 kb on + strand, within Dsui_2990at 3198.552 kb on + strand, within Dsui_2990at 3198.575 kb on + strand, within Dsui_2990at 3198.590 kb on - strand, within Dsui_2990at 3198.603 kb on - strandat 3198.660 kb on - strand, within Dsui_2990at 3198.721 kb on + strand, within Dsui_2990at 3198.749 kb on + strandat 3198.759 kb on + strandat 3198.761 kb on + strandat 3198.762 kb on - strandat 3198.985 kb on + strandat 3198.985 kb on + strandat 3198.988 kb on - strandat 3198.993 kb on - strandat 3199.011 kb on + strandat 3199.288 kb on + strand, within Dsui_2991at 3199.288 kb on + strand, within Dsui_2991at 3199.316 kb on + strand, within Dsui_2991at 3199.347 kb on - strandat 3199.382 kb on + strand, within Dsui_2991at 3199.541 kb on - strandat 3199.542 kb on + strand, within Dsui_2991at 3199.614 kb on + strand, within Dsui_2991at 3199.833 kb on - strand, within Dsui_2991at 3199.938 kb on + strand, within Dsui_2991at 3199.994 kb on - strandat 3200.114 kb on + strand, within Dsui_2991at 3200.127 kb on - strandat 3200.212 kb on + strand, within Dsui_2991at 3200.225 kb on - strand, within Dsui_2991at 3200.301 kb on - strand, within Dsui_2991at 3200.334 kb on - strandat 3200.421 kb on + strand, within Dsui_2991at 3200.421 kb on + strand, within Dsui_2991at 3200.429 kb on - strand, within Dsui_2991at 3200.524 kb on + strandat 3200.524 kb on + strand, within Dsui_2991at 3200.790 kb on + strand, within Dsui_2991at 3200.892 kb on - strandat 3201.328 kb on + strandat 3201.336 kb on - strandat 3201.563 kb on + strand, within Dsui_2992at 3201.592 kb on + strand, within Dsui_2992at 3201.805 kb on + strand, within Dsui_2992at 3201.823 kb on - strandat 3201.823 kb on - strandat 3201.832 kb on - strandat 3201.963 kb on + strandat 3201.971 kb on - strand, within Dsui_2992at 3201.977 kb on + strand, within Dsui_2992at 3202.002 kb on - strand, within Dsui_2992at 3202.085 kb on - strandat 3202.112 kb on + strand, within Dsui_2992at 3202.117 kb on + strand, within Dsui_2992at 3202.139 kb on - strand, within Dsui_2992at 3202.159 kb on + strand, within Dsui_2992at 3202.214 kb on + strand, within Dsui_2992at 3202.224 kb on + strand, within Dsui_2992

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,197,873 + -0.4
3,198,044 - +0.6
3,198,069 + Dsui_2990 0.11 -1.0
3,198,074 + Dsui_2990 0.11 -2.0
3,198,077 - -1.0
3,198,130 + Dsui_2990 0.18 -1.4
3,198,138 - Dsui_2990 0.19 +0.6
3,198,189 - +0.6
3,198,199 + Dsui_2990 0.26 +0.6
3,198,315 - +0.6
3,198,466 + Dsui_2990 0.57 -1.8
3,198,481 + Dsui_2990 0.59 -0.1
3,198,552 + Dsui_2990 0.67 -1.9
3,198,575 + Dsui_2990 0.70 +0.2
3,198,590 - Dsui_2990 0.72 -0.4
3,198,603 - +0.6
3,198,660 - Dsui_2990 0.80 -1.4
3,198,721 + Dsui_2990 0.87 -2.3
3,198,749 + -2.0
3,198,759 + -0.9
3,198,761 + +1.3
3,198,762 - -0.4
3,198,985 + -3.4
3,198,985 + +0.2
3,198,988 - -0.4
3,198,993 - -0.4
3,199,011 + -1.4
3,199,288 + Dsui_2991 0.19 -2.0
3,199,288 + Dsui_2991 0.19 -1.9
3,199,316 + Dsui_2991 0.20 -0.4
3,199,347 - +0.6
3,199,382 + Dsui_2991 0.23 -0.4
3,199,541 - +0.6
3,199,542 + Dsui_2991 0.29 -1.6
3,199,614 + Dsui_2991 0.32 -1.0
3,199,833 - Dsui_2991 0.41 -2.8
3,199,938 + Dsui_2991 0.46 -1.4
3,199,994 - +0.6
3,200,114 + Dsui_2991 0.53 -0.0
3,200,127 - -0.4
3,200,212 + Dsui_2991 0.57 -1.8
3,200,225 - Dsui_2991 0.58 -1.0
3,200,301 - Dsui_2991 0.61 -0.4
3,200,334 - -0.4
3,200,421 + Dsui_2991 0.66 +0.6
3,200,421 + Dsui_2991 0.66 -1.8
3,200,429 - Dsui_2991 0.66 -1.8
3,200,524 + +0.6
3,200,524 + Dsui_2991 0.70 -1.4
3,200,790 + Dsui_2991 0.81 +0.6
3,200,892 - +0.6
3,201,328 + -0.9
3,201,336 - +0.6
3,201,563 + Dsui_2992 0.26 +0.6
3,201,592 + Dsui_2992 0.28 +0.6
3,201,805 + Dsui_2992 0.46 -0.4
3,201,823 - -0.4
3,201,823 - -1.8
3,201,832 - +0.6
3,201,963 + +0.6
3,201,971 - Dsui_2992 0.60 -0.1
3,201,977 + Dsui_2992 0.61 +0.6
3,202,002 - Dsui_2992 0.63 -2.3
3,202,085 - +0.6
3,202,112 + Dsui_2992 0.72 +1.6
3,202,117 + Dsui_2992 0.73 +0.6
3,202,139 - Dsui_2992 0.75 -0.4
3,202,159 + Dsui_2992 0.76 +0.6
3,202,214 + Dsui_2992 0.81 -0.8
3,202,224 + Dsui_2992 0.82 -2.6

Or see this region's nucleotide sequence