Strain Fitness in Dechlorosoma suillum PS around Dsui_2990

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2989 and Dsui_2990 are separated by 226 nucleotidesDsui_2990 and Dsui_2991 are separated by 2 nucleotides Dsui_2989: Dsui_2989 - PAS domain S-box, at 3,195,656 to 3,197,752 _2989 Dsui_2990: Dsui_2990 - MoxR-like ATPase, at 3,197,979 to 3,198,827 _2990 Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253 _2991 Position (kb) 3197 3198 3199Strain fitness (log2 ratio) -3 -2 -1 0 1at 3196.997 kb on - strand, within Dsui_2989at 3196.997 kb on - strand, within Dsui_2989at 3197.447 kb on - strand, within Dsui_2989at 3197.462 kb on + strand, within Dsui_2989at 3197.530 kb on + strandat 3197.538 kb on - strand, within Dsui_2989at 3197.561 kb on - strandat 3197.590 kb on + strandat 3197.598 kb on - strandat 3197.598 kb on - strandat 3197.604 kb on - strandat 3197.609 kb on - strandat 3197.628 kb on + strandat 3197.709 kb on - strandat 3197.774 kb on - strandat 3197.822 kb on - strandat 3197.823 kb on - strandat 3197.823 kb on - strandat 3197.823 kb on - strandat 3197.873 kb on + strandat 3198.044 kb on - strandat 3198.069 kb on + strand, within Dsui_2990at 3198.074 kb on + strand, within Dsui_2990at 3198.077 kb on - strandat 3198.130 kb on + strand, within Dsui_2990at 3198.138 kb on - strand, within Dsui_2990at 3198.189 kb on - strandat 3198.199 kb on + strand, within Dsui_2990at 3198.315 kb on - strandat 3198.466 kb on + strand, within Dsui_2990at 3198.481 kb on + strand, within Dsui_2990at 3198.552 kb on + strand, within Dsui_2990at 3198.575 kb on + strand, within Dsui_2990at 3198.590 kb on - strand, within Dsui_2990at 3198.603 kb on - strandat 3198.660 kb on - strand, within Dsui_2990at 3198.721 kb on + strand, within Dsui_2990at 3198.749 kb on + strandat 3198.759 kb on + strandat 3198.761 kb on + strandat 3198.762 kb on - strandat 3198.985 kb on + strandat 3198.985 kb on + strandat 3198.988 kb on - strandat 3198.993 kb on - strandat 3199.011 kb on + strandat 3199.288 kb on + strand, within Dsui_2991at 3199.288 kb on + strand, within Dsui_2991at 3199.316 kb on + strand, within Dsui_2991at 3199.347 kb on - strandat 3199.382 kb on + strand, within Dsui_2991at 3199.541 kb on - strandat 3199.542 kb on + strand, within Dsui_2991at 3199.614 kb on + strand, within Dsui_2991

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,196,997 - Dsui_2989 0.64 +0.0
3,196,997 - Dsui_2989 0.64 -0.4
3,197,447 - Dsui_2989 0.85 +0.2
3,197,462 + Dsui_2989 0.86 -0.4
3,197,530 + -1.4
3,197,538 - Dsui_2989 0.90 +0.4
3,197,561 - +0.7
3,197,590 + -0.4
3,197,598 - -0.5
3,197,598 - -0.1
3,197,604 - -1.0
3,197,609 - +1.2
3,197,628 + +0.6
3,197,709 - +1.6
3,197,774 - -1.3
3,197,822 - -0.4
3,197,823 - -0.4
3,197,823 - -0.4
3,197,823 - +0.6
3,197,873 + -0.4
3,198,044 - +0.6
3,198,069 + Dsui_2990 0.11 -1.0
3,198,074 + Dsui_2990 0.11 -2.0
3,198,077 - -1.0
3,198,130 + Dsui_2990 0.18 -1.4
3,198,138 - Dsui_2990 0.19 +0.6
3,198,189 - +0.6
3,198,199 + Dsui_2990 0.26 +0.6
3,198,315 - +0.6
3,198,466 + Dsui_2990 0.57 -1.8
3,198,481 + Dsui_2990 0.59 -0.1
3,198,552 + Dsui_2990 0.67 -1.9
3,198,575 + Dsui_2990 0.70 +0.2
3,198,590 - Dsui_2990 0.72 -0.4
3,198,603 - +0.6
3,198,660 - Dsui_2990 0.80 -1.4
3,198,721 + Dsui_2990 0.87 -2.3
3,198,749 + -2.0
3,198,759 + -0.9
3,198,761 + +1.3
3,198,762 - -0.4
3,198,985 + -3.4
3,198,985 + +0.2
3,198,988 - -0.4
3,198,993 - -0.4
3,199,011 + -1.4
3,199,288 + Dsui_2991 0.19 -2.0
3,199,288 + Dsui_2991 0.19 -1.9
3,199,316 + Dsui_2991 0.20 -0.4
3,199,347 - +0.6
3,199,382 + Dsui_2991 0.23 -0.4
3,199,541 - +0.6
3,199,542 + Dsui_2991 0.29 -1.6
3,199,614 + Dsui_2991 0.32 -1.0

Or see this region's nucleotide sequence