Strain Fitness in Dechlorosoma suillum PS around Dsui_2977

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2976 and Dsui_2977 overlap by 4 nucleotidesDsui_2977 and Dsui_2978 are separated by 290 nucleotides Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058 _2976 Dsui_2977: Dsui_2977 - RNA polymerase sigma factor, sigma-70 family, at 3,184,055 to 3,184,567 _2977 Dsui_2978: Dsui_2978 - dihydroorotate dehydrogenase, subfamily 2, at 3,184,858 to 3,185,919 _2978 Position (kb) 3184 3185Strain fitness (log2 ratio) -1 0 1at 3183.114 kb on - strandat 3183.184 kb on - strand, within Dsui_2976at 3183.358 kb on + strandat 3183.364 kb on + strandat 3183.419 kb on - strand, within Dsui_2976at 3183.503 kb on - strand, within Dsui_2976at 3183.560 kb on - strand, within Dsui_2976at 3183.584 kb on - strand, within Dsui_2976at 3183.733 kb on + strandat 3184.106 kb on - strandat 3184.106 kb on - strandat 3184.164 kb on + strand, within Dsui_2977at 3184.319 kb on - strand, within Dsui_2977at 3184.360 kb on - strand, within Dsui_2977at 3184.400 kb on - strand, within Dsui_2977at 3184.445 kb on + strand, within Dsui_2977at 3184.484 kb on - strand, within Dsui_2977at 3184.521 kb on - strandat 3184.537 kb on - strandat 3184.747 kb on - strandat 3184.851 kb on - strandat 3184.882 kb on + strandat 3184.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,183,114 - -0.3
3,183,184 - Dsui_2976 0.14 +0.1
3,183,358 + +0.6
3,183,364 + -0.4
3,183,419 - Dsui_2976 0.37 -0.1
3,183,503 - Dsui_2976 0.45 -0.3
3,183,560 - Dsui_2976 0.51 -0.1
3,183,584 - Dsui_2976 0.53 -0.4
3,183,733 + +0.6
3,184,106 - -0.3
3,184,106 - -0.1
3,184,164 + Dsui_2977 0.21 -1.0
3,184,319 - Dsui_2977 0.51 -0.0
3,184,360 - Dsui_2977 0.59 -0.2
3,184,400 - Dsui_2977 0.67 -0.7
3,184,445 + Dsui_2977 0.76 -1.4
3,184,484 - Dsui_2977 0.84 -0.1
3,184,521 - +0.0
3,184,537 - -1.0
3,184,747 - -1.0
3,184,851 - +0.6
3,184,882 + -0.1
3,184,882 + -0.1

Or see this region's nucleotide sequence