Strain Fitness in Dechlorosoma suillum PS around Dsui_2935

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2933 and Dsui_2934 are separated by 63 nucleotidesDsui_2934 and Dsui_2935 are separated by 239 nucleotidesDsui_2935 and Dsui_2936 overlap by 1 nucleotidesDsui_2936 and Dsui_2937 are separated by 0 nucleotides Dsui_2933: Dsui_2933 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,136,400 to 3,139,513 _2933 Dsui_2934: Dsui_2934 - hypothetical protein, at 3,139,577 to 3,139,960 _2934 Dsui_2935: Dsui_2935 - NAD/NADP transhydrogenase alpha subunit, at 3,140,200 to 3,141,327 _2935 Dsui_2936: Dsui_2936 - hypothetical protein, at 3,141,327 to 3,141,629 _2936 Dsui_2937: Dsui_2937 - NAD/NADP transhydrogenase beta subunit, at 3,141,630 to 3,143,000 _2937 Position (kb) 3140 3141 3142Strain fitness (log2 ratio) -3 -2 -1 0 1at 3139.203 kb on - strandat 3139.324 kb on - strandat 3139.420 kb on + strandat 3139.420 kb on + strandat 3139.557 kb on - strandat 3139.749 kb on + strand, within Dsui_2934at 3139.757 kb on - strand, within Dsui_2934at 3139.944 kb on + strandat 3139.963 kb on - strandat 3140.115 kb on + strandat 3140.115 kb on + strandat 3140.196 kb on - strandat 3140.205 kb on + strandat 3140.310 kb on + strandat 3140.317 kb on + strand, within Dsui_2935at 3140.427 kb on + strand, within Dsui_2935at 3140.462 kb on + strand, within Dsui_2935at 3140.467 kb on + strandat 3140.481 kb on + strandat 3140.523 kb on - strandat 3140.529 kb on + strand, within Dsui_2935at 3140.546 kb on + strandat 3140.605 kb on - strand, within Dsui_2935at 3140.634 kb on + strandat 3141.020 kb on - strandat 3141.131 kb on + strandat 3141.334 kb on + strandat 3141.366 kb on + strand, within Dsui_2936at 3141.398 kb on - strandat 3141.405 kb on + strand, within Dsui_2936at 3141.474 kb on + strand, within Dsui_2936at 3141.692 kb on + strandat 3141.706 kb on - strandat 3141.780 kb on - strand, within Dsui_2937at 3141.813 kb on + strand, within Dsui_2937at 3141.819 kb on + strand, within Dsui_2937at 3141.825 kb on + strand, within Dsui_2937at 3141.844 kb on + strand, within Dsui_2937at 3141.882 kb on + strand, within Dsui_2937at 3142.049 kb on - strandat 3142.052 kb on + strand, within Dsui_2937at 3142.053 kb on + strand, within Dsui_2937at 3142.109 kb on + strand, within Dsui_2937at 3142.110 kb on + strand, within Dsui_2937at 3142.176 kb on - strand, within Dsui_2937at 3142.213 kb on + strand, within Dsui_2937at 3142.306 kb on + strand, within Dsui_2937at 3142.311 kb on + strand, within Dsui_2937at 3142.321 kb on + strand, within Dsui_2937at 3142.321 kb on + strand, within Dsui_2937

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,139,203 - -1.0
3,139,324 - +0.6
3,139,420 + -2.0
3,139,420 + +0.6
3,139,557 - +0.6
3,139,749 + Dsui_2934 0.45 -1.0
3,139,757 - Dsui_2934 0.47 -1.0
3,139,944 + +0.6
3,139,963 - -0.4
3,140,115 + -1.0
3,140,115 + +0.6
3,140,196 - -0.4
3,140,205 + +0.6
3,140,310 + -0.4
3,140,317 + Dsui_2935 0.10 -1.7
3,140,427 + Dsui_2935 0.20 -0.4
3,140,462 + Dsui_2935 0.23 -0.4
3,140,467 + +0.6
3,140,481 + +0.6
3,140,523 - +0.6
3,140,529 + Dsui_2935 0.29 -2.0
3,140,546 + +0.6
3,140,605 - Dsui_2935 0.36 -1.0
3,140,634 + +0.6
3,141,020 - -0.4
3,141,131 + +0.6
3,141,334 + -0.4
3,141,366 + Dsui_2936 0.13 -0.4
3,141,398 - +0.6
3,141,405 + Dsui_2936 0.26 -1.0
3,141,474 + Dsui_2936 0.49 +0.6
3,141,692 + +0.6
3,141,706 - -2.0
3,141,780 - Dsui_2937 0.11 +0.6
3,141,813 + Dsui_2937 0.13 -1.7
3,141,819 + Dsui_2937 0.14 +0.6
3,141,825 + Dsui_2937 0.14 +0.6
3,141,844 + Dsui_2937 0.16 -3.2
3,141,882 + Dsui_2937 0.18 -0.4
3,142,049 - -0.4
3,142,052 + Dsui_2937 0.31 -0.4
3,142,053 + Dsui_2937 0.31 -1.0
3,142,109 + Dsui_2937 0.35 -1.0
3,142,110 + Dsui_2937 0.35 -0.4
3,142,176 - Dsui_2937 0.40 -2.0
3,142,213 + Dsui_2937 0.43 -2.4
3,142,306 + Dsui_2937 0.49 +0.6
3,142,311 + Dsui_2937 0.50 -1.0
3,142,321 + Dsui_2937 0.50 -1.0
3,142,321 + Dsui_2937 0.50 -1.4

Or see this region's nucleotide sequence