Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2933 and Dsui_2934 are separated by 63 nucleotides Dsui_2934 and Dsui_2935 are separated by 239 nucleotides Dsui_2935 and Dsui_2936 overlap by 1 nucleotides Dsui_2936 and Dsui_2937 are separated by 0 nucleotides
Dsui_2933: Dsui_2933 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,136,400 to 3,139,513
_2933
Dsui_2934: Dsui_2934 - hypothetical protein, at 3,139,577 to 3,139,960
_2934
Dsui_2935: Dsui_2935 - NAD/NADP transhydrogenase alpha subunit, at 3,140,200 to 3,141,327
_2935
Dsui_2936: Dsui_2936 - hypothetical protein, at 3,141,327 to 3,141,629
_2936
Dsui_2937: Dsui_2937 - NAD/NADP transhydrogenase beta subunit, at 3,141,630 to 3,143,000
_2937
Position (kb)
3140
3141
3142 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3139.203 kb on - strand at 3139.324 kb on - strand at 3139.420 kb on + strand at 3139.420 kb on + strand at 3139.557 kb on - strand at 3139.749 kb on + strand, within Dsui_2934 at 3139.757 kb on - strand, within Dsui_2934 at 3139.944 kb on + strand at 3139.963 kb on - strand at 3140.115 kb on + strand at 3140.115 kb on + strand at 3140.196 kb on - strand at 3140.205 kb on + strand at 3140.310 kb on + strand at 3140.317 kb on + strand, within Dsui_2935 at 3140.427 kb on + strand, within Dsui_2935 at 3140.462 kb on + strand, within Dsui_2935 at 3140.467 kb on + strand at 3140.481 kb on + strand at 3140.523 kb on - strand at 3140.529 kb on + strand, within Dsui_2935 at 3140.546 kb on + strand at 3140.605 kb on - strand, within Dsui_2935 at 3140.634 kb on + strand at 3141.020 kb on - strand at 3141.131 kb on + strand at 3141.334 kb on + strand at 3141.366 kb on + strand, within Dsui_2936 at 3141.398 kb on - strand at 3141.405 kb on + strand, within Dsui_2936 at 3141.474 kb on + strand, within Dsui_2936 at 3141.692 kb on + strand at 3141.706 kb on - strand at 3141.780 kb on - strand, within Dsui_2937 at 3141.813 kb on + strand, within Dsui_2937 at 3141.819 kb on + strand, within Dsui_2937 at 3141.825 kb on + strand, within Dsui_2937 at 3141.844 kb on + strand, within Dsui_2937 at 3141.882 kb on + strand, within Dsui_2937 at 3142.049 kb on - strand at 3142.052 kb on + strand, within Dsui_2937 at 3142.053 kb on + strand, within Dsui_2937 at 3142.109 kb on + strand, within Dsui_2937 at 3142.110 kb on + strand, within Dsui_2937 at 3142.176 kb on - strand, within Dsui_2937 at 3142.213 kb on + strand, within Dsui_2937 at 3142.306 kb on + strand, within Dsui_2937 at 3142.311 kb on + strand, within Dsui_2937 at 3142.321 kb on + strand, within Dsui_2937 at 3142.321 kb on + strand, within Dsui_2937
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,139,203 - -1.0 3,139,324 - +0.6 3,139,420 + -2.0 3,139,420 + +0.6 3,139,557 - +0.6 3,139,749 + Dsui_2934 0.45 -1.0 3,139,757 - Dsui_2934 0.47 -1.0 3,139,944 + +0.6 3,139,963 - -0.4 3,140,115 + -1.0 3,140,115 + +0.6 3,140,196 - -0.4 3,140,205 + +0.6 3,140,310 + -0.4 3,140,317 + Dsui_2935 0.10 -1.7 3,140,427 + Dsui_2935 0.20 -0.4 3,140,462 + Dsui_2935 0.23 -0.4 3,140,467 + +0.6 3,140,481 + +0.6 3,140,523 - +0.6 3,140,529 + Dsui_2935 0.29 -2.0 3,140,546 + +0.6 3,140,605 - Dsui_2935 0.36 -1.0 3,140,634 + +0.6 3,141,020 - -0.4 3,141,131 + +0.6 3,141,334 + -0.4 3,141,366 + Dsui_2936 0.13 -0.4 3,141,398 - +0.6 3,141,405 + Dsui_2936 0.26 -1.0 3,141,474 + Dsui_2936 0.49 +0.6 3,141,692 + +0.6 3,141,706 - -2.0 3,141,780 - Dsui_2937 0.11 +0.6 3,141,813 + Dsui_2937 0.13 -1.7 3,141,819 + Dsui_2937 0.14 +0.6 3,141,825 + Dsui_2937 0.14 +0.6 3,141,844 + Dsui_2937 0.16 -3.2 3,141,882 + Dsui_2937 0.18 -0.4 3,142,049 - -0.4 3,142,052 + Dsui_2937 0.31 -0.4 3,142,053 + Dsui_2937 0.31 -1.0 3,142,109 + Dsui_2937 0.35 -1.0 3,142,110 + Dsui_2937 0.35 -0.4 3,142,176 - Dsui_2937 0.40 -2.0 3,142,213 + Dsui_2937 0.43 -2.4 3,142,306 + Dsui_2937 0.49 +0.6 3,142,311 + Dsui_2937 0.50 -1.0 3,142,321 + Dsui_2937 0.50 -1.0 3,142,321 + Dsui_2937 0.50 -1.4
Or see this region's nucleotide sequence