Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2880 and Dsui_2881 overlap by 4 nucleotides Dsui_2881 and Dsui_2882 are separated by 10 nucleotides Dsui_2882 and Dsui_2883 overlap by 1 nucleotides
Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080
_2880
Dsui_2881: Dsui_2881 - 8-amino-7-oxononanoate synthase, at 3,077,077 to 3,078,252
_2881
Dsui_2882: Dsui_2882 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,078,263 to 3,079,015
_2882
Dsui_2883: Dsui_2883 - biotin biosynthesis protein BioC, at 3,079,015 to 3,079,788
_2883
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3076.112 kb on + strand, within Dsui_2880 at 3076.205 kb on - strand at 3076.245 kb on - strand, within Dsui_2880 at 3076.264 kb on - strand at 3076.264 kb on - strand, within Dsui_2880 at 3076.429 kb on + strand, within Dsui_2880 at 3076.455 kb on + strand, within Dsui_2880 at 3076.620 kb on - strand at 3076.629 kb on + strand, within Dsui_2880 at 3076.641 kb on + strand, within Dsui_2880 at 3076.649 kb on - strand at 3076.810 kb on + strand, within Dsui_2880 at 3076.831 kb on + strand, within Dsui_2880 at 3076.907 kb on - strand at 3076.954 kb on - strand at 3077.009 kb on - strand at 3077.111 kb on - strand at 3077.219 kb on + strand, within Dsui_2881 at 3077.227 kb on - strand at 3077.724 kb on - strand, within Dsui_2881 at 3077.838 kb on - strand, within Dsui_2881 at 3077.869 kb on - strand, within Dsui_2881 at 3077.915 kb on + strand, within Dsui_2881 at 3078.077 kb on + strand, within Dsui_2881 at 3078.085 kb on - strand at 3078.159 kb on - strand at 3078.199 kb on - strand at 3078.228 kb on - strand at 3078.285 kb on + strand at 3078.293 kb on - strand at 3078.298 kb on - strand at 3078.408 kb on + strand, within Dsui_2882 at 3078.505 kb on + strand, within Dsui_2882 at 3078.513 kb on - strand, within Dsui_2882 at 3078.524 kb on + strand, within Dsui_2882 at 3078.586 kb on - strand at 3078.878 kb on - strand, within Dsui_2882 at 3078.879 kb on - strand at 3078.983 kb on + strand at 3079.040 kb on + strand at 3079.069 kb on - strand at 3079.100 kb on - strand, within Dsui_2883 at 3079.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,076,112 + Dsui_2880 0.28 -2.3 3,076,205 - +0.6 3,076,245 - Dsui_2880 0.38 +0.6 3,076,264 - +0.6 3,076,264 - Dsui_2880 0.39 +0.6 3,076,429 + Dsui_2880 0.51 -1.3 3,076,455 + Dsui_2880 0.53 -1.8 3,076,620 - -0.4 3,076,629 + Dsui_2880 0.66 -2.3 3,076,641 + Dsui_2880 0.67 -2.3 3,076,649 - -0.4 3,076,810 + Dsui_2880 0.80 -2.3 3,076,831 + Dsui_2880 0.81 -2.0 3,076,907 - -0.4 3,076,954 - +0.6 3,077,009 - -1.4 3,077,111 - +0.6 3,077,219 + Dsui_2881 0.12 -2.5 3,077,227 - +0.6 3,077,724 - Dsui_2881 0.55 -3.0 3,077,838 - Dsui_2881 0.65 +0.6 3,077,869 - Dsui_2881 0.67 -1.0 3,077,915 + Dsui_2881 0.71 -2.1 3,078,077 + Dsui_2881 0.85 -2.3 3,078,085 - +0.6 3,078,159 - -1.4 3,078,199 - -1.0 3,078,228 - -0.4 3,078,285 + -2.2 3,078,293 - +0.6 3,078,298 - +0.6 3,078,408 + Dsui_2882 0.19 -1.5 3,078,505 + Dsui_2882 0.32 -2.0 3,078,513 - Dsui_2882 0.33 -0.4 3,078,524 + Dsui_2882 0.35 -2.1 3,078,586 - +0.6 3,078,878 - Dsui_2882 0.82 -0.4 3,078,879 - +0.6 3,078,983 + -2.0 3,079,040 + -2.5 3,079,069 - -1.0 3,079,100 - Dsui_2883 0.11 +0.6 3,079,224 + -1.4
Or see this region's nucleotide sequence