Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2420 and Dsui_2421 overlap by 35 nucleotides Dsui_2421 and Dsui_2422 are separated by 47 nucleotides Dsui_2422 and Dsui_2423 are separated by 270 nucleotides
Dsui_2420: Dsui_2420 - uncharacterized radical SAM protein YgiQ, at 2,577,638 to 2,579,956
_2420
Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223
_2421
Dsui_2422: Dsui_2422 - truncated hemoglobin, at 2,581,271 to 2,581,657
_2422
Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742
_2423
Position (kb)
2579
2580
2581
2582 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2578.922 kb on - strand at 2578.964 kb on + strand, within Dsui_2420 at 2578.980 kb on + strand, within Dsui_2420 at 2579.031 kb on + strand, within Dsui_2420 at 2579.043 kb on + strand, within Dsui_2420 at 2579.079 kb on - strand at 2579.085 kb on + strand, within Dsui_2420 at 2579.341 kb on + strand, within Dsui_2420 at 2579.397 kb on - strand, within Dsui_2420 at 2579.451 kb on - strand, within Dsui_2420 at 2579.459 kb on + strand, within Dsui_2420 at 2579.467 kb on - strand at 2579.479 kb on + strand, within Dsui_2420 at 2579.480 kb on + strand, within Dsui_2420 at 2579.544 kb on + strand, within Dsui_2420 at 2579.552 kb on - strand, within Dsui_2420 at 2579.615 kb on + strand, within Dsui_2420 at 2579.914 kb on + strand at 2579.925 kb on + strand at 2579.928 kb on - strand at 2579.975 kb on + strand at 2580.005 kb on + strand at 2580.028 kb on - strand at 2580.033 kb on - strand at 2580.041 kb on + strand at 2580.111 kb on - strand, within Dsui_2421 at 2580.193 kb on - strand, within Dsui_2421 at 2580.251 kb on + strand, within Dsui_2421 at 2580.251 kb on + strand, within Dsui_2421 at 2580.254 kb on - strand, within Dsui_2421 at 2580.259 kb on - strand, within Dsui_2421 at 2580.263 kb on + strand, within Dsui_2421 at 2580.281 kb on - strand, within Dsui_2421 at 2580.291 kb on + strand, within Dsui_2421 at 2580.318 kb on - strand, within Dsui_2421 at 2580.323 kb on + strand, within Dsui_2421 at 2580.355 kb on - strand, within Dsui_2421 at 2580.383 kb on + strand, within Dsui_2421 at 2580.391 kb on - strand, within Dsui_2421 at 2580.406 kb on + strand, within Dsui_2421 at 2580.414 kb on - strand, within Dsui_2421 at 2580.427 kb on - strand, within Dsui_2421 at 2580.501 kb on - strand, within Dsui_2421 at 2580.502 kb on + strand, within Dsui_2421 at 2580.539 kb on - strand, within Dsui_2421 at 2580.642 kb on - strand, within Dsui_2421 at 2580.695 kb on - strand, within Dsui_2421 at 2580.738 kb on + strand, within Dsui_2421 at 2580.809 kb on - strand, within Dsui_2421 at 2580.841 kb on - strand, within Dsui_2421 at 2580.937 kb on - strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.976 kb on + strand, within Dsui_2421 at 2580.989 kb on + strand, within Dsui_2421 at 2581.029 kb on + strand, within Dsui_2421 at 2581.153 kb on + strand at 2581.181 kb on + strand at 2581.198 kb on - strand at 2581.198 kb on - strand at 2581.307 kb on + strand at 2581.398 kb on + strand, within Dsui_2422 at 2581.406 kb on - strand at 2581.407 kb on + strand, within Dsui_2422 at 2581.413 kb on + strand at 2581.451 kb on - strand, within Dsui_2422 at 2581.530 kb on + strand, within Dsui_2422 at 2581.556 kb on + strand, within Dsui_2422 at 2581.563 kb on + strand, within Dsui_2422 at 2581.749 kb on + strand at 2581.842 kb on + strand at 2581.886 kb on + strand at 2581.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,578,922 - +0.5 2,578,964 + Dsui_2420 0.57 -0.1 2,578,980 + Dsui_2420 0.58 -0.3 2,579,031 + Dsui_2420 0.60 +0.1 2,579,043 + Dsui_2420 0.61 -1.8 2,579,079 - -0.5 2,579,085 + Dsui_2420 0.62 -0.2 2,579,341 + Dsui_2420 0.73 -0.2 2,579,397 - Dsui_2420 0.76 -0.5 2,579,451 - Dsui_2420 0.78 -2.8 2,579,459 + Dsui_2420 0.79 +0.1 2,579,467 - -0.5 2,579,479 + Dsui_2420 0.79 +0.3 2,579,480 + Dsui_2420 0.79 +0.2 2,579,544 + Dsui_2420 0.82 -0.2 2,579,552 - Dsui_2420 0.83 -0.5 2,579,615 + Dsui_2420 0.85 -0.5 2,579,914 + +0.0 2,579,925 + -0.1 2,579,928 - -0.8 2,579,975 + -0.5 2,580,005 + -0.3 2,580,028 - -0.2 2,580,033 - -0.2 2,580,041 + +0.4 2,580,111 - Dsui_2421 0.15 +0.1 2,580,193 - Dsui_2421 0.21 -0.4 2,580,251 + Dsui_2421 0.25 -1.0 2,580,251 + Dsui_2421 0.25 -0.8 2,580,254 - Dsui_2421 0.25 -0.5 2,580,259 - Dsui_2421 0.26 -0.1 2,580,263 + Dsui_2421 0.26 -0.1 2,580,281 - Dsui_2421 0.28 +0.6 2,580,291 + Dsui_2421 0.28 +0.2 2,580,318 - Dsui_2421 0.30 -0.3 2,580,323 + Dsui_2421 0.31 -0.3 2,580,355 - Dsui_2421 0.33 -0.1 2,580,383 + Dsui_2421 0.35 -1.2 2,580,391 - Dsui_2421 0.36 -0.1 2,580,406 + Dsui_2421 0.37 -3.2 2,580,414 - Dsui_2421 0.38 -0.1 2,580,427 - Dsui_2421 0.39 -0.1 2,580,501 - Dsui_2421 0.44 -0.1 2,580,502 + Dsui_2421 0.45 +0.5 2,580,539 - Dsui_2421 0.47 -0.2 2,580,642 - Dsui_2421 0.55 -0.9 2,580,695 - Dsui_2421 0.59 +0.1 2,580,738 + Dsui_2421 0.63 -2.3 2,580,809 - Dsui_2421 0.68 -0.7 2,580,841 - Dsui_2421 0.71 +0.1 2,580,937 - Dsui_2421 0.78 -0.3 2,580,958 + Dsui_2421 0.80 -0.0 2,580,958 + Dsui_2421 0.80 -0.8 2,580,976 + Dsui_2421 0.81 +2.1 2,580,989 + Dsui_2421 0.82 -0.8 2,581,029 + Dsui_2421 0.85 -2.3 2,581,153 + -0.2 2,581,181 + -0.5 2,581,198 - -0.6 2,581,198 - +0.2 2,581,307 + +0.5 2,581,398 + Dsui_2422 0.33 -1.0 2,581,406 - +0.5 2,581,407 + Dsui_2422 0.35 -0.5 2,581,413 + -0.5 2,581,451 - Dsui_2422 0.47 -1.8 2,581,530 + Dsui_2422 0.67 -0.2 2,581,556 + Dsui_2422 0.74 -1.0 2,581,563 + Dsui_2422 0.75 -1.2 2,581,749 + -2.1 2,581,842 + -0.0 2,581,886 + +0.1 2,581,886 + -0.1
Or see this region's nucleotide sequence