Strain Fitness in Dechlorosoma suillum PS around Dsui_2398

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2396 and Dsui_2397 are separated by 112 nucleotidesDsui_2397 and Dsui_2398 are separated by 25 nucleotidesDsui_2398 and Dsui_2399 are separated by 62 nucleotidesDsui_2399 and Dsui_2400 are separated by 4 nucleotides Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951 _2396 Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780 _2397 Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801 _2398 Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514 _2399 Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847 _2400 Position (kb) 2550 2551 2552Strain fitness (log2 ratio) -3 -2 -1 0 1at 2549.853 kb on + strand, within Dsui_2396at 2549.915 kb on - strandat 2549.938 kb on + strandat 2550.036 kb on + strandat 2550.044 kb on + strandat 2550.049 kb on + strandat 2550.049 kb on + strandat 2550.059 kb on + strandat 2550.066 kb on + strandat 2550.093 kb on + strandat 2550.148 kb on + strand, within Dsui_2397at 2550.206 kb on + strand, within Dsui_2397at 2550.230 kb on + strand, within Dsui_2397at 2550.357 kb on + strand, within Dsui_2397at 2550.377 kb on + strand, within Dsui_2397at 2550.379 kb on - strandat 2550.420 kb on - strandat 2550.460 kb on - strand, within Dsui_2397at 2550.566 kb on + strand, within Dsui_2397at 2550.566 kb on + strand, within Dsui_2397at 2550.590 kb on + strandat 2550.603 kb on - strand, within Dsui_2397at 2550.654 kb on - strand, within Dsui_2397at 2550.723 kb on + strandat 2550.978 kb on + strandat 2550.986 kb on - strand, within Dsui_2398at 2551.000 kb on - strand, within Dsui_2398at 2551.000 kb on - strandat 2551.104 kb on - strand, within Dsui_2398at 2551.114 kb on - strand, within Dsui_2398at 2551.136 kb on - strand, within Dsui_2398at 2551.225 kb on - strand, within Dsui_2398at 2551.226 kb on - strandat 2551.285 kb on + strandat 2551.510 kb on - strandat 2551.544 kb on + strandat 2551.634 kb on + strand, within Dsui_2398at 2551.704 kb on + strandat 2551.941 kb on - strandat 2552.101 kb on - strand, within Dsui_2399at 2552.124 kb on - strandat 2552.160 kb on - strandat 2552.170 kb on - strandat 2552.174 kb on + strandat 2552.316 kb on - strand, within Dsui_2399at 2552.629 kb on + strandat 2552.632 kb on - strandat 2552.714 kb on - strand, within Dsui_2400

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,549,853 + Dsui_2396 0.88 -0.3
2,549,915 - +0.5
2,549,938 + -0.0
2,550,036 + -0.1
2,550,044 + -0.3
2,550,049 + -0.3
2,550,049 + +0.1
2,550,059 + +0.3
2,550,066 + -0.3
2,550,093 + +0.1
2,550,148 + Dsui_2397 0.12 -1.8
2,550,206 + Dsui_2397 0.20 -2.6
2,550,230 + Dsui_2397 0.23 -1.0
2,550,357 + Dsui_2397 0.41 -1.5
2,550,377 + Dsui_2397 0.44 -2.3
2,550,379 - -1.0
2,550,420 - -0.5
2,550,460 - Dsui_2397 0.55 -1.0
2,550,566 + Dsui_2397 0.70 -0.5
2,550,566 + Dsui_2397 0.70 -0.5
2,550,590 + +0.5
2,550,603 - Dsui_2397 0.75 -2.9
2,550,654 - Dsui_2397 0.82 -0.5
2,550,723 + +0.5
2,550,978 + +1.5
2,550,986 - Dsui_2398 0.18 -1.8
2,551,000 - Dsui_2398 0.19 +0.5
2,551,000 - +0.5
2,551,104 - Dsui_2398 0.30 +0.5
2,551,114 - Dsui_2398 0.31 +0.5
2,551,136 - Dsui_2398 0.33 +0.5
2,551,225 - Dsui_2398 0.42 +0.5
2,551,226 - +0.5
2,551,285 + +0.5
2,551,510 - +0.5
2,551,544 + +0.5
2,551,634 + Dsui_2398 0.83 -2.5
2,551,704 + -1.8
2,551,941 - +0.5
2,552,101 - Dsui_2399 0.36 -1.0
2,552,124 - -0.5
2,552,160 - +0.5
2,552,170 - +0.5
2,552,174 + -0.5
2,552,316 - Dsui_2399 0.69 +0.5
2,552,629 + +0.5
2,552,632 - -1.0
2,552,714 - Dsui_2400 0.15 -1.0

Or see this region's nucleotide sequence