Strain Fitness in Dechlorosoma suillum PS around Dsui_2384

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2383 and Dsui_2384 overlap by 44 nucleotidesDsui_2384 and Dsui_2385 are separated by 49 nucleotides Dsui_2383: Dsui_2383 - hypothetical protein, at 2,532,843 to 2,534,117 _2383 Dsui_2384: Dsui_2384 - putative esterase of the alpha-beta hydrolase superfamily, at 2,534,074 to 2,535,162 _2384 Dsui_2385: Dsui_2385 - transcription-repair coupling factor Mfd, at 2,535,212 to 2,538,808 _2385 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -3 -2 -1 0 1at 2533.261 kb on - strandat 2533.326 kb on + strand, within Dsui_2383at 2533.331 kb on + strand, within Dsui_2383at 2533.352 kb on + strand, within Dsui_2383at 2533.353 kb on + strand, within Dsui_2383at 2533.372 kb on + strandat 2533.488 kb on + strand, within Dsui_2383at 2533.488 kb on + strandat 2533.706 kb on - strandat 2533.777 kb on - strandat 2533.804 kb on - strandat 2533.829 kb on + strand, within Dsui_2383at 2533.861 kb on - strandat 2533.891 kb on + strand, within Dsui_2383at 2533.906 kb on + strand, within Dsui_2383at 2534.025 kb on + strandat 2534.087 kb on + strandat 2534.101 kb on - strandat 2534.182 kb on + strandat 2534.226 kb on + strand, within Dsui_2384at 2534.234 kb on - strand, within Dsui_2384at 2534.234 kb on - strand, within Dsui_2384at 2534.386 kb on - strand, within Dsui_2384at 2534.464 kb on + strand, within Dsui_2384at 2534.472 kb on - strand, within Dsui_2384at 2534.575 kb on - strand, within Dsui_2384at 2534.580 kb on - strand, within Dsui_2384at 2534.597 kb on + strand, within Dsui_2384at 2534.610 kb on + strandat 2534.768 kb on - strand, within Dsui_2384at 2534.802 kb on - strand, within Dsui_2384at 2534.885 kb on - strand, within Dsui_2384at 2534.933 kb on + strand, within Dsui_2384at 2534.970 kb on + strandat 2534.978 kb on - strand, within Dsui_2384at 2535.017 kb on + strand, within Dsui_2384at 2535.092 kb on - strandat 2535.145 kb on - strandat 2535.152 kb on + strandat 2535.155 kb on - strandat 2535.160 kb on - strandat 2535.200 kb on + strandat 2535.200 kb on + strandat 2535.208 kb on - strandat 2535.372 kb on + strandat 2535.479 kb on + strandat 2535.503 kb on + strandat 2535.530 kb on - strandat 2535.577 kb on - strand, within Dsui_2385at 2535.586 kb on + strandat 2535.690 kb on - strand, within Dsui_2385at 2535.811 kb on + strandat 2535.998 kb on + strand, within Dsui_2385at 2536.122 kb on - strand, within Dsui_2385at 2536.134 kb on - strand, within Dsui_2385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,533,261 - -1.0
2,533,326 + Dsui_2383 0.38 +0.6
2,533,331 + Dsui_2383 0.38 +0.6
2,533,352 + Dsui_2383 0.40 +0.6
2,533,353 + Dsui_2383 0.40 +0.6
2,533,372 + -1.0
2,533,488 + Dsui_2383 0.51 -0.4
2,533,488 + -0.4
2,533,706 - -0.4
2,533,777 - -0.4
2,533,804 - +0.6
2,533,829 + Dsui_2383 0.77 +0.6
2,533,861 - +0.6
2,533,891 + Dsui_2383 0.82 +0.6
2,533,906 + Dsui_2383 0.83 -0.4
2,534,025 + -0.4
2,534,087 + -2.6
2,534,101 - -0.4
2,534,182 + -0.4
2,534,226 + Dsui_2384 0.14 -1.0
2,534,234 - Dsui_2384 0.15 -1.0
2,534,234 - Dsui_2384 0.15 -1.0
2,534,386 - Dsui_2384 0.29 -1.0
2,534,464 + Dsui_2384 0.36 -1.0
2,534,472 - Dsui_2384 0.37 +0.6
2,534,575 - Dsui_2384 0.46 -3.1
2,534,580 - Dsui_2384 0.46 +0.6
2,534,597 + Dsui_2384 0.48 -1.0
2,534,610 + -0.4
2,534,768 - Dsui_2384 0.64 -2.0
2,534,802 - Dsui_2384 0.67 -0.4
2,534,885 - Dsui_2384 0.74 -1.4
2,534,933 + Dsui_2384 0.79 -1.0
2,534,970 + +0.6
2,534,978 - Dsui_2384 0.83 -1.0
2,535,017 + Dsui_2384 0.87 -1.4
2,535,092 - +1.1
2,535,145 - +0.0
2,535,152 + +0.6
2,535,155 - -0.2
2,535,160 - +0.2
2,535,200 + +0.6
2,535,200 + -0.4
2,535,208 - +0.1
2,535,372 + +0.6
2,535,479 + +0.6
2,535,503 + +0.6
2,535,530 - -0.8
2,535,577 - Dsui_2385 0.10 -0.7
2,535,586 + +0.6
2,535,690 - Dsui_2385 0.13 -0.9
2,535,811 + -1.0
2,535,998 + Dsui_2385 0.22 -0.4
2,536,122 - Dsui_2385 0.25 -0.8
2,536,134 - Dsui_2385 0.26 -0.3

Or see this region's nucleotide sequence