Strain Fitness in Dechlorosoma suillum PS around Dsui_2341

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2340 and Dsui_2341 are separated by 4 nucleotidesDsui_2341 and Dsui_2342 are separated by 1 nucleotidesDsui_2342 and Dsui_2343 overlap by 4 nucleotides Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772 _2340 Dsui_2341: Dsui_2341 - ABC-type multidrug transport system, ATPase component, at 2,492,777 to 2,493,721 _2341 Dsui_2342: Dsui_2342 - multidrug resistance efflux pump, at 2,493,723 to 2,494,688 _2342 Dsui_2343: Dsui_2343 - transcriptional regulator, at 2,494,685 to 2,495,233 _2343 Position (kb) 2492 2493 2494Strain fitness (log2 ratio) -2 -1 0 1at 2491.794 kb on - strand, within Dsui_2340at 2491.799 kb on - strand, within Dsui_2340at 2491.801 kb on - strand, within Dsui_2340at 2491.814 kb on - strand, within Dsui_2340at 2491.857 kb on + strand, within Dsui_2340at 2491.903 kb on - strand, within Dsui_2340at 2491.928 kb on + strand, within Dsui_2340at 2491.952 kb on + strand, within Dsui_2340at 2491.965 kb on + strand, within Dsui_2340at 2491.973 kb on + strand, within Dsui_2340at 2491.976 kb on - strand, within Dsui_2340at 2491.981 kb on - strand, within Dsui_2340at 2492.042 kb on - strandat 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.189 kb on - strand, within Dsui_2340at 2492.204 kb on - strand, within Dsui_2340at 2492.310 kb on + strandat 2492.487 kb on - strand, within Dsui_2340at 2492.624 kb on - strand, within Dsui_2340at 2492.684 kb on - strandat 2492.753 kb on - strandat 2492.753 kb on - strandat 2492.796 kb on + strandat 2492.799 kb on - strandat 2492.983 kb on + strandat 2492.991 kb on - strand, within Dsui_2341at 2493.021 kb on - strand, within Dsui_2341at 2493.067 kb on - strand, within Dsui_2341at 2493.170 kb on - strand, within Dsui_2341at 2493.219 kb on - strand, within Dsui_2341at 2493.455 kb on + strandat 2493.507 kb on - strand, within Dsui_2341at 2493.544 kb on + strandat 2493.638 kb on - strandat 2493.751 kb on - strandat 2493.864 kb on - strand, within Dsui_2342at 2494.244 kb on + strandat 2494.290 kb on + strandat 2494.298 kb on - strand, within Dsui_2342at 2494.428 kb on - strand, within Dsui_2342at 2494.524 kb on + strandat 2494.532 kb on - strand, within Dsui_2342at 2494.542 kb on - strand, within Dsui_2342at 2494.557 kb on + strand, within Dsui_2342at 2494.580 kb on + strand, within Dsui_2342at 2494.638 kb on + strandat 2494.644 kb on + strandat 2494.695 kb on + strandat 2494.698 kb on - strandat 2494.721 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,491,794 - Dsui_2340 0.14 +0.6
2,491,799 - Dsui_2340 0.14 -0.4
2,491,801 - Dsui_2340 0.14 -0.4
2,491,814 - Dsui_2340 0.15 -2.2
2,491,857 + Dsui_2340 0.19 -0.4
2,491,903 - Dsui_2340 0.23 +0.6
2,491,928 + Dsui_2340 0.25 -1.4
2,491,952 + Dsui_2340 0.28 +0.6
2,491,965 + Dsui_2340 0.29 -0.4
2,491,973 + Dsui_2340 0.29 -1.0
2,491,976 - Dsui_2340 0.30 +0.6
2,491,981 - Dsui_2340 0.30 -2.2
2,492,042 - +0.6
2,492,042 - Dsui_2340 0.36 +0.6
2,492,042 - Dsui_2340 0.36 -2.4
2,492,042 - Dsui_2340 0.36 -0.4
2,492,189 - Dsui_2340 0.49 +0.6
2,492,204 - Dsui_2340 0.50 +0.6
2,492,310 + -1.0
2,492,487 - Dsui_2340 0.75 -2.2
2,492,624 - Dsui_2340 0.87 -0.4
2,492,684 - -0.4
2,492,753 - +0.6
2,492,753 - -1.3
2,492,796 + -1.0
2,492,799 - -0.4
2,492,983 + +0.6
2,492,991 - Dsui_2341 0.23 -1.8
2,493,021 - Dsui_2341 0.26 -0.4
2,493,067 - Dsui_2341 0.31 -1.0
2,493,170 - Dsui_2341 0.42 -1.0
2,493,219 - Dsui_2341 0.47 -2.3
2,493,455 + -0.4
2,493,507 - Dsui_2341 0.77 -0.4
2,493,544 + +0.6
2,493,638 - -0.4
2,493,751 - -1.0
2,493,864 - Dsui_2342 0.15 -1.8
2,494,244 + -0.4
2,494,290 + +0.6
2,494,298 - Dsui_2342 0.60 -1.4
2,494,428 - Dsui_2342 0.73 -2.6
2,494,524 + +0.6
2,494,532 - Dsui_2342 0.84 -1.0
2,494,542 - Dsui_2342 0.85 -1.0
2,494,557 + Dsui_2342 0.86 -1.0
2,494,580 + Dsui_2342 0.89 +0.1
2,494,638 + -0.4
2,494,644 + +0.6
2,494,695 + -0.4
2,494,698 - -1.0
2,494,721 - -1.4

Or see this region's nucleotide sequence