Strain Fitness in Dechlorosoma suillum PS around Dsui_2097

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2096 and Dsui_2097 are separated by 131 nucleotidesDsui_2097 and Dsui_2098 are separated by 77 nucleotidesDsui_2098 and Dsui_2099 are separated by 13 nucleotides Dsui_2096: Dsui_2096 - methyl-accepting chemotaxis protein, at 2,220,459 to 2,222,066 _2096 Dsui_2097: Dsui_2097 - putative phosphohydrolase, at 2,222,198 to 2,223,391 _2097 Dsui_2098: Dsui_2098 - hypothetical protein, at 2,223,469 to 2,223,855 _2098 Dsui_2099: Dsui_2099 - RNA polymerase sigma factor, sigma-70 family, at 2,223,869 to 2,224,462 _2099 Position (kb) 2222 2223 2224Strain fitness (log2 ratio) -2 -1 0 1at 2221.247 kb on + strand, within Dsui_2096at 2221.247 kb on + strand, within Dsui_2096at 2221.254 kb on - strand, within Dsui_2096at 2221.255 kb on - strand, within Dsui_2096at 2221.322 kb on + strand, within Dsui_2096at 2221.351 kb on + strand, within Dsui_2096at 2221.701 kb on + strand, within Dsui_2096at 2221.818 kb on + strand, within Dsui_2096at 2222.257 kb on + strandat 2222.282 kb on + strandat 2222.366 kb on - strand, within Dsui_2097at 2222.371 kb on - strand, within Dsui_2097at 2222.443 kb on - strand, within Dsui_2097at 2222.504 kb on + strand, within Dsui_2097at 2222.629 kb on + strandat 2222.634 kb on + strand, within Dsui_2097at 2222.642 kb on - strandat 2222.710 kb on - strand, within Dsui_2097at 2222.928 kb on + strandat 2222.935 kb on - strand, within Dsui_2097at 2223.325 kb on + strandat 2223.497 kb on + strandat 2223.497 kb on + strandat 2223.671 kb on - strand, within Dsui_2098at 2223.872 kb on + strandat 2223.875 kb on - strandat 2223.880 kb on - strandat 2223.880 kb on - strandat 2223.977 kb on - strandat 2223.979 kb on + strandat 2223.987 kb on - strandat 2223.987 kb on - strandat 2224.169 kb on + strand, within Dsui_2099at 2224.178 kb on - strandat 2224.178 kb on - strand, within Dsui_2099at 2224.269 kb on + strandat 2224.311 kb on - strandat 2224.353 kb on - strand, within Dsui_2099

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,221,247 + Dsui_2096 0.49 -1.7
2,221,247 + Dsui_2096 0.49 -2.2
2,221,254 - Dsui_2096 0.49 +0.8
2,221,255 - Dsui_2096 0.50 -1.5
2,221,322 + Dsui_2096 0.54 -1.5
2,221,351 + Dsui_2096 0.55 -1.5
2,221,701 + Dsui_2096 0.77 +0.8
2,221,818 + Dsui_2096 0.85 -0.2
2,222,257 + +0.8
2,222,282 + -0.7
2,222,366 - Dsui_2097 0.14 -0.7
2,222,371 - Dsui_2097 0.14 +0.8
2,222,443 - Dsui_2097 0.21 +0.8
2,222,504 + Dsui_2097 0.26 -0.2
2,222,629 + +0.8
2,222,634 + Dsui_2097 0.37 -1.2
2,222,642 - -0.2
2,222,710 - Dsui_2097 0.43 -0.7
2,222,928 + +0.8
2,222,935 - Dsui_2097 0.62 +0.8
2,223,325 + -1.5
2,223,497 + -0.7
2,223,497 + -0.2
2,223,671 - Dsui_2098 0.52 +0.1
2,223,872 + +0.8
2,223,875 - -0.7
2,223,880 - +0.8
2,223,880 - -1.2
2,223,977 - +0.8
2,223,979 + +0.8
2,223,987 - +0.8
2,223,987 - -1.2
2,224,169 + Dsui_2099 0.51 +0.8
2,224,178 - +0.8
2,224,178 - Dsui_2099 0.52 -1.2
2,224,269 + +0.8
2,224,311 - -0.7
2,224,353 - Dsui_2099 0.81 -0.2

Or see this region's nucleotide sequence