Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2096 and Dsui_2097 are separated by 131 nucleotides Dsui_2097 and Dsui_2098 are separated by 77 nucleotides Dsui_2098 and Dsui_2099 are separated by 13 nucleotides
Dsui_2096: Dsui_2096 - methyl-accepting chemotaxis protein, at 2,220,459 to 2,222,066
_2096
Dsui_2097: Dsui_2097 - putative phosphohydrolase, at 2,222,198 to 2,223,391
_2097
Dsui_2098: Dsui_2098 - hypothetical protein, at 2,223,469 to 2,223,855
_2098
Dsui_2099: Dsui_2099 - RNA polymerase sigma factor, sigma-70 family, at 2,223,869 to 2,224,462
_2099
Position (kb)
2222
2223
2224 Strain fitness (log2 ratio)
-2
-1
0
1 at 2221.247 kb on + strand, within Dsui_2096 at 2221.247 kb on + strand, within Dsui_2096 at 2221.254 kb on - strand, within Dsui_2096 at 2221.255 kb on - strand, within Dsui_2096 at 2221.322 kb on + strand, within Dsui_2096 at 2221.351 kb on + strand, within Dsui_2096 at 2221.701 kb on + strand, within Dsui_2096 at 2221.818 kb on + strand, within Dsui_2096 at 2222.257 kb on + strand at 2222.282 kb on + strand at 2222.366 kb on - strand, within Dsui_2097 at 2222.371 kb on - strand, within Dsui_2097 at 2222.443 kb on - strand, within Dsui_2097 at 2222.504 kb on + strand, within Dsui_2097 at 2222.629 kb on + strand at 2222.634 kb on + strand, within Dsui_2097 at 2222.642 kb on - strand at 2222.710 kb on - strand, within Dsui_2097 at 2222.928 kb on + strand at 2222.935 kb on - strand, within Dsui_2097 at 2223.325 kb on + strand at 2223.497 kb on + strand at 2223.497 kb on + strand at 2223.671 kb on - strand, within Dsui_2098 at 2223.872 kb on + strand at 2223.875 kb on - strand at 2223.880 kb on - strand at 2223.880 kb on - strand at 2223.977 kb on - strand at 2223.979 kb on + strand at 2223.987 kb on - strand at 2223.987 kb on - strand at 2224.169 kb on + strand, within Dsui_2099 at 2224.178 kb on - strand at 2224.178 kb on - strand, within Dsui_2099 at 2224.269 kb on + strand at 2224.311 kb on - strand at 2224.353 kb on - strand, within Dsui_2099
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,221,247 + Dsui_2096 0.49 -1.7 2,221,247 + Dsui_2096 0.49 -2.2 2,221,254 - Dsui_2096 0.49 +0.8 2,221,255 - Dsui_2096 0.50 -1.5 2,221,322 + Dsui_2096 0.54 -1.5 2,221,351 + Dsui_2096 0.55 -1.5 2,221,701 + Dsui_2096 0.77 +0.8 2,221,818 + Dsui_2096 0.85 -0.2 2,222,257 + +0.8 2,222,282 + -0.7 2,222,366 - Dsui_2097 0.14 -0.7 2,222,371 - Dsui_2097 0.14 +0.8 2,222,443 - Dsui_2097 0.21 +0.8 2,222,504 + Dsui_2097 0.26 -0.2 2,222,629 + +0.8 2,222,634 + Dsui_2097 0.37 -1.2 2,222,642 - -0.2 2,222,710 - Dsui_2097 0.43 -0.7 2,222,928 + +0.8 2,222,935 - Dsui_2097 0.62 +0.8 2,223,325 + -1.5 2,223,497 + -0.7 2,223,497 + -0.2 2,223,671 - Dsui_2098 0.52 +0.1 2,223,872 + +0.8 2,223,875 - -0.7 2,223,880 - +0.8 2,223,880 - -1.2 2,223,977 - +0.8 2,223,979 + +0.8 2,223,987 - +0.8 2,223,987 - -1.2 2,224,169 + Dsui_2099 0.51 +0.8 2,224,178 - +0.8 2,224,178 - Dsui_2099 0.52 -1.2 2,224,269 + +0.8 2,224,311 - -0.7 2,224,353 - Dsui_2099 0.81 -0.2
Or see this region's nucleotide sequence