Strain Fitness in Dechlorosoma suillum PS around Dsui_1904

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1903 and Dsui_1904 are separated by 611 nucleotidesDsui_1904 and Dsui_1905 are separated by 158 nucleotides Dsui_1903: Dsui_1903 - Fe-S oxidoreductase, at 2,003,203 to 2,004,753 _1903 Dsui_1904: Dsui_1904 - aspartate/tyrosine/aromatic aminotransferase, at 2,005,365 to 2,006,561 _1904 Dsui_1905: Dsui_1905 - PAS domain S-box, at 2,006,720 to 2,009,239 _1905 Position (kb) 2005 2006 2007Strain fitness (log2 ratio) -2 -1 0 1at 2004.376 kb on - strand, within Dsui_1903at 2004.391 kb on - strand, within Dsui_1903at 2004.477 kb on + strand, within Dsui_1903at 2004.485 kb on - strand, within Dsui_1903at 2004.539 kb on + strand, within Dsui_1903at 2004.562 kb on - strandat 2004.634 kb on + strandat 2004.661 kb on - strandat 2004.663 kb on + strandat 2004.675 kb on + strandat 2004.683 kb on + strandat 2004.685 kb on - strandat 2004.691 kb on - strandat 2004.691 kb on - strandat 2004.691 kb on - strandat 2004.718 kb on - strandat 2004.757 kb on + strandat 2004.800 kb on + strandat 2004.844 kb on - strandat 2004.855 kb on + strandat 2004.903 kb on + strandat 2004.909 kb on + strandat 2004.909 kb on + strandat 2004.917 kb on - strandat 2004.927 kb on - strandat 2005.011 kb on + strandat 2005.050 kb on - strandat 2005.164 kb on + strandat 2005.173 kb on + strandat 2005.611 kb on - strand, within Dsui_1904at 2005.758 kb on + strandat 2005.800 kb on - strand, within Dsui_1904at 2005.836 kb on - strand, within Dsui_1904at 2006.048 kb on + strand, within Dsui_1904at 2006.223 kb on - strand, within Dsui_1904at 2006.237 kb on + strand, within Dsui_1904at 2006.245 kb on - strand, within Dsui_1904at 2006.280 kb on - strand, within Dsui_1904at 2006.295 kb on - strand, within Dsui_1904at 2006.366 kb on + strand, within Dsui_1904at 2006.419 kb on + strandat 2006.424 kb on + strandat 2006.514 kb on - strandat 2006.524 kb on - strandat 2006.530 kb on - strandat 2006.731 kb on - strandat 2006.796 kb on + strandat 2006.917 kb on + strandat 2007.126 kb on + strand, within Dsui_1905at 2007.198 kb on - strandat 2007.348 kb on - strand, within Dsui_1905at 2007.457 kb on + strandat 2007.465 kb on - strand, within Dsui_1905at 2007.465 kb on - strandat 2007.465 kb on - strand, within Dsui_1905

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,004,376 - Dsui_1903 0.76 -0.8
2,004,391 - Dsui_1903 0.77 -0.2
2,004,477 + Dsui_1903 0.82 +0.8
2,004,485 - Dsui_1903 0.83 -0.2
2,004,539 + Dsui_1903 0.86 -2.0
2,004,562 - +0.8
2,004,634 + -2.5
2,004,661 - -2.4
2,004,663 + -1.2
2,004,675 + -0.2
2,004,683 + +0.8
2,004,685 - -0.8
2,004,691 - -0.2
2,004,691 - -0.0
2,004,691 - +0.2
2,004,718 - +0.8
2,004,757 + -0.8
2,004,800 + +0.8
2,004,844 - -0.8
2,004,855 + -0.2
2,004,903 + -0.8
2,004,909 + +0.8
2,004,909 + -0.8
2,004,917 - +0.8
2,004,927 - +0.8
2,005,011 + -0.2
2,005,050 - -1.5
2,005,164 + -0.8
2,005,173 + +0.8
2,005,611 - Dsui_1904 0.21 -0.4
2,005,758 + +0.8
2,005,800 - Dsui_1904 0.36 -0.8
2,005,836 - Dsui_1904 0.39 -1.7
2,006,048 + Dsui_1904 0.57 +0.8
2,006,223 - Dsui_1904 0.72 -0.1
2,006,237 + Dsui_1904 0.73 -2.2
2,006,245 - Dsui_1904 0.74 -2.5
2,006,280 - Dsui_1904 0.76 +0.2
2,006,295 - Dsui_1904 0.78 -0.8
2,006,366 + Dsui_1904 0.84 -0.8
2,006,419 + +0.8
2,006,424 + -0.2
2,006,514 - -0.6
2,006,524 - -1.0
2,006,530 - -0.5
2,006,731 - -1.2
2,006,796 + +0.8
2,006,917 + -0.2
2,007,126 + Dsui_1905 0.16 -1.2
2,007,198 - +0.8
2,007,348 - Dsui_1905 0.25 +0.8
2,007,457 + -0.2
2,007,465 - Dsui_1905 0.30 -0.2
2,007,465 - -0.2
2,007,465 - Dsui_1905 0.30 +0.8

Or see this region's nucleotide sequence