Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1884 and Dsui_1885 are separated by 13 nucleotides Dsui_1885 and Dsui_1886 overlap by 8 nucleotides Dsui_1886 and Dsui_1887 overlap by 4 nucleotides
Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827
_1884
Dsui_1885: Dsui_1885 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,983,841 to 1,984,383
_1885
Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689
_1886
Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896
_1887
Position (kb)
1984
1985
1986 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1983.421 kb on + strand, within Dsui_1884 at 1983.435 kb on - strand, within Dsui_1884 at 1983.634 kb on - strand, within Dsui_1884 at 1984.038 kb on - strand, within Dsui_1885 at 1984.043 kb on - strand, within Dsui_1885 at 1984.083 kb on - strand, within Dsui_1885 at 1984.091 kb on + strand, within Dsui_1885 at 1984.223 kb on - strand, within Dsui_1885 at 1984.243 kb on - strand, within Dsui_1885 at 1984.256 kb on + strand, within Dsui_1885 at 1984.406 kb on + strand at 1984.520 kb on + strand, within Dsui_1886 at 1984.673 kb on + strand at 1984.680 kb on - strand, within Dsui_1886 at 1984.680 kb on - strand, within Dsui_1886 at 1984.737 kb on + strand, within Dsui_1886 at 1984.809 kb on - strand, within Dsui_1886 at 1984.848 kb on - strand, within Dsui_1886 at 1984.929 kb on - strand, within Dsui_1886 at 1985.011 kb on + strand at 1985.162 kb on - strand, within Dsui_1886 at 1985.190 kb on - strand, within Dsui_1886 at 1985.190 kb on - strand, within Dsui_1886 at 1985.195 kb on + strand, within Dsui_1886 at 1985.293 kb on - strand, within Dsui_1886 at 1985.366 kb on + strand at 1985.445 kb on - strand, within Dsui_1886 at 1985.454 kb on - strand, within Dsui_1886 at 1985.459 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.648 kb on - strand at 1985.658 kb on - strand at 1985.738 kb on + strand at 1985.752 kb on - strand at 1985.814 kb on + strand at 1985.816 kb on - strand at 1985.822 kb on - strand at 1985.958 kb on + strand at 1985.961 kb on - strand, within Dsui_1887 at 1985.979 kb on - strand, within Dsui_1887 at 1986.012 kb on + strand at 1986.138 kb on - strand, within Dsui_1887 at 1986.264 kb on - strand, within Dsui_1887 at 1986.404 kb on - strand, within Dsui_1887 at 1986.420 kb on + strand, within Dsui_1887 at 1986.507 kb on + strand, within Dsui_1887 at 1986.515 kb on - strand, within Dsui_1887 at 1986.635 kb on + strand at 1986.675 kb on - strand, within Dsui_1887
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,983,421 + Dsui_1884 0.65 -2.0 1,983,435 - Dsui_1884 0.66 -1.4 1,983,634 - Dsui_1884 0.83 -1.2 1,984,038 - Dsui_1885 0.36 -2.0 1,984,043 - Dsui_1885 0.37 -0.2 1,984,083 - Dsui_1885 0.45 -1.8 1,984,091 + Dsui_1885 0.46 -0.8 1,984,223 - Dsui_1885 0.70 +0.8 1,984,243 - Dsui_1885 0.74 -1.5 1,984,256 + Dsui_1885 0.76 -0.2 1,984,406 + +0.8 1,984,520 + Dsui_1886 0.11 -0.8 1,984,673 + +0.8 1,984,680 - Dsui_1886 0.23 -0.5 1,984,680 - Dsui_1886 0.23 -1.2 1,984,737 + Dsui_1886 0.27 -0.2 1,984,809 - Dsui_1886 0.33 +0.8 1,984,848 - Dsui_1886 0.36 +1.1 1,984,929 - Dsui_1886 0.42 -1.2 1,985,011 + +0.8 1,985,162 - Dsui_1886 0.60 -1.7 1,985,190 - Dsui_1886 0.62 +0.8 1,985,190 - Dsui_1886 0.62 -0.2 1,985,195 + Dsui_1886 0.62 +0.8 1,985,293 - Dsui_1886 0.70 +1.8 1,985,366 + +0.8 1,985,445 - Dsui_1886 0.81 -0.2 1,985,454 - Dsui_1886 0.82 +1.4 1,985,459 - Dsui_1886 0.82 -1.0 1,985,508 - Dsui_1886 0.86 -0.2 1,985,508 - Dsui_1886 0.86 -0.4 1,985,508 - Dsui_1886 0.86 -0.8 1,985,648 - +0.8 1,985,658 - -0.6 1,985,738 + +0.8 1,985,752 - -1.0 1,985,814 + -0.2 1,985,816 - +0.5 1,985,822 - +0.8 1,985,958 + +0.8 1,985,961 - Dsui_1887 0.12 +0.8 1,985,979 - Dsui_1887 0.13 -0.8 1,986,012 + +0.8 1,986,138 - Dsui_1887 0.20 +0.8 1,986,264 - Dsui_1887 0.26 -0.8 1,986,404 - Dsui_1887 0.32 -1.2 1,986,420 + Dsui_1887 0.33 -0.2 1,986,507 + Dsui_1887 0.37 +0.8 1,986,515 - Dsui_1887 0.37 +2.8 1,986,635 + -0.2 1,986,675 - Dsui_1887 0.45 +0.8
Or see this region's nucleotide sequence