Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1855 and Dsui_1856 are separated by 102 nucleotides Dsui_1856 and Dsui_1857 overlap by 13 nucleotides Dsui_1857 and Dsui_1858 are separated by 154 nucleotides
Dsui_1855: Dsui_1855 - hypothetical protein, at 1,949,964 to 1,950,902
_1855
Dsui_1856: Dsui_1856 - 4-oxalocrotonate tautomerase family enzyme, at 1,951,005 to 1,951,214
_1856
Dsui_1857: Dsui_1857 - putative permease, DMT superfamily, at 1,951,202 to 1,952,101
_1857
Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140
_1858
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1950.342 kb on + strand at 1950.521 kb on + strand at 1950.589 kb on + strand, within Dsui_1855 at 1950.590 kb on - strand at 1950.630 kb on - strand at 1950.637 kb on + strand, within Dsui_1855 at 1950.675 kb on - strand at 1950.739 kb on - strand at 1950.815 kb on - strand at 1951.000 kb on - strand at 1951.074 kb on - strand at 1951.182 kb on + strand, within Dsui_1856 at 1951.227 kb on - strand at 1951.368 kb on - strand, within Dsui_1857 at 1951.376 kb on - strand at 1951.385 kb on + strand at 1951.440 kb on - strand at 1951.536 kb on + strand at 1951.544 kb on - strand, within Dsui_1857 at 1951.572 kb on - strand, within Dsui_1857 at 1951.611 kb on + strand, within Dsui_1857 at 1951.845 kb on + strand at 1951.896 kb on - strand at 1952.017 kb on + strand at 1952.268 kb on + strand at 1952.342 kb on + strand at 1952.342 kb on + strand at 1952.729 kb on + strand, within Dsui_1858 at 1952.737 kb on - strand at 1952.784 kb on + strand, within Dsui_1858 at 1952.792 kb on - strand, within Dsui_1858 at 1952.825 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1953.048 kb on - strand, within Dsui_1858
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,950,342 + -0.3 1,950,521 + -0.3 1,950,589 + Dsui_1855 0.67 -0.9 1,950,590 - -0.9 1,950,630 - -0.3 1,950,637 + Dsui_1855 0.72 -2.7 1,950,675 - +0.7 1,950,739 - +0.7 1,950,815 - -1.3 1,951,000 - -0.3 1,951,074 - +0.7 1,951,182 + Dsui_1856 0.84 -0.3 1,951,227 - -0.3 1,951,368 - Dsui_1857 0.18 -3.0 1,951,376 - -0.9 1,951,385 + -0.3 1,951,440 - +0.7 1,951,536 + -0.9 1,951,544 - Dsui_1857 0.38 +0.7 1,951,572 - Dsui_1857 0.41 -1.7 1,951,611 + Dsui_1857 0.45 -0.9 1,951,845 + -0.3 1,951,896 - -0.3 1,952,017 + -0.3 1,952,268 + +0.2 1,952,342 + +0.5 1,952,342 + +0.2 1,952,729 + Dsui_1858 0.53 +0.0 1,952,737 - -0.3 1,952,784 + Dsui_1858 0.60 +0.0 1,952,792 - Dsui_1858 0.61 -0.3 1,952,825 + Dsui_1858 0.64 +0.6 1,952,938 + Dsui_1858 0.77 +0.2 1,952,938 + Dsui_1858 0.77 +0.2 1,953,048 - Dsui_1858 0.89 -0.3
Or see this region's nucleotide sequence