Strain Fitness in Dechlorosoma suillum PS around Dsui_1855

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1854 and Dsui_1855 are separated by 384 nucleotidesDsui_1855 and Dsui_1856 are separated by 102 nucleotidesDsui_1856 and Dsui_1857 overlap by 13 nucleotides Dsui_1854: Dsui_1854 - hypothetical protein, at 1,948,314 to 1,949,579 _1854 Dsui_1855: Dsui_1855 - hypothetical protein, at 1,949,964 to 1,950,902 _1855 Dsui_1856: Dsui_1856 - 4-oxalocrotonate tautomerase family enzyme, at 1,951,005 to 1,951,214 _1856 Dsui_1857: Dsui_1857 - putative permease, DMT superfamily, at 1,951,202 to 1,952,101 _1857 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -3 -2 -1 0 1at 1949.126 kb on + strandat 1949.188 kb on - strandat 1949.212 kb on - strand, within Dsui_1854at 1949.214 kb on - strandat 1949.240 kb on - strandat 1949.535 kb on + strandat 1949.608 kb on + strandat 1949.969 kb on - strandat 1950.089 kb on - strand, within Dsui_1855at 1950.089 kb on - strand, within Dsui_1855at 1950.099 kb on - strandat 1950.342 kb on + strandat 1950.521 kb on + strandat 1950.589 kb on + strand, within Dsui_1855at 1950.590 kb on - strandat 1950.630 kb on - strandat 1950.637 kb on + strand, within Dsui_1855at 1950.675 kb on - strandat 1950.739 kb on - strandat 1950.815 kb on - strandat 1951.000 kb on - strandat 1951.074 kb on - strandat 1951.182 kb on + strand, within Dsui_1856at 1951.227 kb on - strandat 1951.368 kb on - strand, within Dsui_1857at 1951.376 kb on - strandat 1951.385 kb on + strandat 1951.440 kb on - strandat 1951.536 kb on + strandat 1951.544 kb on - strand, within Dsui_1857at 1951.572 kb on - strand, within Dsui_1857at 1951.611 kb on + strand, within Dsui_1857at 1951.845 kb on + strandat 1951.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,949,126 + -1.7
1,949,188 - +0.7
1,949,212 - Dsui_1854 0.71 +0.7
1,949,214 - -0.3
1,949,240 - +0.7
1,949,535 + -0.3
1,949,608 + +0.7
1,949,969 - +0.7
1,950,089 - Dsui_1855 0.13 -0.9
1,950,089 - Dsui_1855 0.13 -0.3
1,950,099 - +0.7
1,950,342 + -0.3
1,950,521 + -0.3
1,950,589 + Dsui_1855 0.67 -0.9
1,950,590 - -0.9
1,950,630 - -0.3
1,950,637 + Dsui_1855 0.72 -2.7
1,950,675 - +0.7
1,950,739 - +0.7
1,950,815 - -1.3
1,951,000 - -0.3
1,951,074 - +0.7
1,951,182 + Dsui_1856 0.84 -0.3
1,951,227 - -0.3
1,951,368 - Dsui_1857 0.18 -3.0
1,951,376 - -0.9
1,951,385 + -0.3
1,951,440 - +0.7
1,951,536 + -0.9
1,951,544 - Dsui_1857 0.38 +0.7
1,951,572 - Dsui_1857 0.41 -1.7
1,951,611 + Dsui_1857 0.45 -0.9
1,951,845 + -0.3
1,951,896 - -0.3

Or see this region's nucleotide sequence