Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1854 and Dsui_1855 are separated by 384 nucleotides Dsui_1855 and Dsui_1856 are separated by 102 nucleotides Dsui_1856 and Dsui_1857 overlap by 13 nucleotides
Dsui_1854: Dsui_1854 - hypothetical protein, at 1,948,314 to 1,949,579
_1854
Dsui_1855: Dsui_1855 - hypothetical protein, at 1,949,964 to 1,950,902
_1855
Dsui_1856: Dsui_1856 - 4-oxalocrotonate tautomerase family enzyme, at 1,951,005 to 1,951,214
_1856
Dsui_1857: Dsui_1857 - putative permease, DMT superfamily, at 1,951,202 to 1,952,101
_1857
Position (kb)
1949
1950
1951 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1949.126 kb on + strand at 1949.188 kb on - strand at 1949.212 kb on - strand, within Dsui_1854 at 1949.214 kb on - strand at 1949.240 kb on - strand at 1949.535 kb on + strand at 1949.608 kb on + strand at 1949.969 kb on - strand at 1950.089 kb on - strand, within Dsui_1855 at 1950.089 kb on - strand, within Dsui_1855 at 1950.099 kb on - strand at 1950.342 kb on + strand at 1950.521 kb on + strand at 1950.589 kb on + strand, within Dsui_1855 at 1950.590 kb on - strand at 1950.630 kb on - strand at 1950.637 kb on + strand, within Dsui_1855 at 1950.675 kb on - strand at 1950.739 kb on - strand at 1950.815 kb on - strand at 1951.000 kb on - strand at 1951.074 kb on - strand at 1951.182 kb on + strand, within Dsui_1856 at 1951.227 kb on - strand at 1951.368 kb on - strand, within Dsui_1857 at 1951.376 kb on - strand at 1951.385 kb on + strand at 1951.440 kb on - strand at 1951.536 kb on + strand at 1951.544 kb on - strand, within Dsui_1857 at 1951.572 kb on - strand, within Dsui_1857 at 1951.611 kb on + strand, within Dsui_1857 at 1951.845 kb on + strand at 1951.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,949,126 + -1.7 1,949,188 - +0.7 1,949,212 - Dsui_1854 0.71 +0.7 1,949,214 - -0.3 1,949,240 - +0.7 1,949,535 + -0.3 1,949,608 + +0.7 1,949,969 - +0.7 1,950,089 - Dsui_1855 0.13 -0.9 1,950,089 - Dsui_1855 0.13 -0.3 1,950,099 - +0.7 1,950,342 + -0.3 1,950,521 + -0.3 1,950,589 + Dsui_1855 0.67 -0.9 1,950,590 - -0.9 1,950,630 - -0.3 1,950,637 + Dsui_1855 0.72 -2.7 1,950,675 - +0.7 1,950,739 - +0.7 1,950,815 - -1.3 1,951,000 - -0.3 1,951,074 - +0.7 1,951,182 + Dsui_1856 0.84 -0.3 1,951,227 - -0.3 1,951,368 - Dsui_1857 0.18 -3.0 1,951,376 - -0.9 1,951,385 + -0.3 1,951,440 - +0.7 1,951,536 + -0.9 1,951,544 - Dsui_1857 0.38 +0.7 1,951,572 - Dsui_1857 0.41 -1.7 1,951,611 + Dsui_1857 0.45 -0.9 1,951,845 + -0.3 1,951,896 - -0.3
Or see this region's nucleotide sequence