Strain Fitness in Dechlorosoma suillum PS around Dsui_1816

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1814 and Dsui_1815 are separated by 82 nucleotidesDsui_1815 and Dsui_1816 are separated by 108 nucleotidesDsui_1816 and Dsui_1817 are separated by 222 nucleotides Dsui_1814: Dsui_1814 - cytochrome c1, at 1,911,635 to 1,912,348 _1814 Dsui_1815: Dsui_1815 - glutathione S-transferase, at 1,912,431 to 1,913,027 _1815 Dsui_1816: Dsui_1816 - stringent starvation protein B, at 1,913,136 to 1,913,555 _1816 Dsui_1817: Dsui_1817 - anaerobic dehydrogenase, typically selenocysteine-containing, at 1,913,778 to 1,916,543 _1817 Position (kb) 1913 1914Strain fitness (log2 ratio) -3 -2 -1 0 1at 1913.108 kb on + strandat 1913.155 kb on + strandat 1913.156 kb on + strandat 1913.164 kb on - strandat 1913.208 kb on - strand, within Dsui_1816at 1913.208 kb on - strand, within Dsui_1816at 1913.465 kb on - strand, within Dsui_1816at 1913.527 kb on + strandat 1913.657 kb on - strandat 1913.683 kb on + strandat 1913.769 kb on + strandat 1913.806 kb on + strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.853 kb on + strandat 1913.929 kb on + strandat 1914.040 kb on + strandat 1914.048 kb on - strandat 1914.053 kb on - strandat 1914.058 kb on - strandat 1914.300 kb on + strand, within Dsui_1817at 1914.301 kb on + strandat 1914.362 kb on + strand, within Dsui_1817at 1914.385 kb on + strandat 1914.445 kb on + strand, within Dsui_1817at 1914.551 kb on + strand, within Dsui_1817

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,913,108 + -0.0
1,913,155 + +0.2
1,913,156 + +0.1
1,913,164 - -2.0
1,913,208 - Dsui_1816 0.17 -0.5
1,913,208 - Dsui_1816 0.17 +0.5
1,913,465 - Dsui_1816 0.78 -1.5
1,913,527 + -0.5
1,913,657 - -1.0
1,913,683 + -1.6
1,913,769 + -0.5
1,913,806 + -2.5
1,913,814 - +0.5
1,913,814 - +0.5
1,913,814 - +0.5
1,913,814 - +0.5
1,913,853 + +0.5
1,913,929 + -2.0
1,914,040 + -0.5
1,914,048 - +0.5
1,914,053 - -1.0
1,914,058 - +0.5
1,914,300 + Dsui_1817 0.19 -0.5
1,914,301 + -0.5
1,914,362 + Dsui_1817 0.21 -3.5
1,914,385 + +0.5
1,914,445 + Dsui_1817 0.24 -0.5
1,914,551 + Dsui_1817 0.28 -1.8

Or see this region's nucleotide sequence