Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1616 and Dsui_1617 are separated by 201 nucleotides Dsui_1617 and Dsui_1618 are separated by 43 nucleotides Dsui_1618 and Dsui_1619 are separated by 176 nucleotides
Dsui_1616: Dsui_1616 - nitroreductase, at 1,697,944 to 1,698,534
_1616
Dsui_1617: Dsui_1617 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,698,736 to 1,699,404
_1617
Dsui_1618: Dsui_1618 - signal transduction histidine kinase, at 1,699,448 to 1,700,716
_1618
Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644
_1619
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1698.496 kb on + strand at 1698.504 kb on - strand at 1698.504 kb on - strand at 1698.690 kb on - strand at 1699.180 kb on - strand at 1699.180 kb on - strand, within Dsui_1617 at 1699.352 kb on + strand at 1699.352 kb on + strand at 1699.390 kb on - strand at 1699.483 kb on + strand at 1699.662 kb on - strand at 1699.678 kb on - strand at 1699.692 kb on + strand, within Dsui_1618 at 1699.773 kb on - strand at 1699.784 kb on + strand, within Dsui_1618 at 1699.869 kb on + strand, within Dsui_1618 at 1699.879 kb on + strand, within Dsui_1618 at 1699.885 kb on + strand, within Dsui_1618 at 1699.885 kb on + strand, within Dsui_1618 at 1699.893 kb on - strand at 1699.929 kb on - strand at 1699.971 kb on - strand at 1699.991 kb on - strand, within Dsui_1618 at 1700.048 kb on + strand, within Dsui_1618 at 1700.095 kb on + strand, within Dsui_1618 at 1700.328 kb on - strand at 1700.354 kb on - strand at 1700.374 kb on - strand, within Dsui_1618 at 1700.439 kb on - strand, within Dsui_1618 at 1700.582 kb on - strand at 1700.837 kb on - strand at 1700.972 kb on - strand at 1700.981 kb on - strand at 1701.062 kb on + strand at 1701.070 kb on - strand at 1701.322 kb on - strand at 1701.322 kb on - strand at 1701.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,698,496 + +0.4 1,698,504 - +0.4 1,698,504 - -1.2 1,698,690 - -1.6 1,699,180 - -1.6 1,699,180 - Dsui_1617 0.66 -1.2 1,699,352 + +0.4 1,699,352 + -1.2 1,699,390 - +0.4 1,699,483 + +0.4 1,699,662 - +0.4 1,699,678 - -0.6 1,699,692 + Dsui_1618 0.19 +0.4 1,699,773 - -0.6 1,699,784 + Dsui_1618 0.26 +0.4 1,699,869 + Dsui_1618 0.33 +0.4 1,699,879 + Dsui_1618 0.34 +0.4 1,699,885 + Dsui_1618 0.34 -1.9 1,699,885 + Dsui_1618 0.34 -2.9 1,699,893 - +0.4 1,699,929 - -1.6 1,699,971 - +0.4 1,699,991 - Dsui_1618 0.43 -1.9 1,700,048 + Dsui_1618 0.47 -1.9 1,700,095 + Dsui_1618 0.51 -1.2 1,700,328 - -0.6 1,700,354 - +0.4 1,700,374 - Dsui_1618 0.73 -2.2 1,700,439 - Dsui_1618 0.78 -0.6 1,700,582 - -1.2 1,700,837 - +0.4 1,700,972 - -0.6 1,700,981 - -2.2 1,701,062 + -3.3 1,701,070 - -1.2 1,701,322 - +0.4 1,701,322 - +0.4 1,701,350 - +0.4
Or see this region's nucleotide sequence