Strain Fitness in Dechlorosoma suillum PS around Dsui_1618

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1616 and Dsui_1617 are separated by 201 nucleotidesDsui_1617 and Dsui_1618 are separated by 43 nucleotidesDsui_1618 and Dsui_1619 are separated by 176 nucleotides Dsui_1616: Dsui_1616 - nitroreductase, at 1,697,944 to 1,698,534 _1616 Dsui_1617: Dsui_1617 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,698,736 to 1,699,404 _1617 Dsui_1618: Dsui_1618 - signal transduction histidine kinase, at 1,699,448 to 1,700,716 _1618 Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644 _1619 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -3 -2 -1 0 1at 1698.496 kb on + strandat 1698.504 kb on - strandat 1698.504 kb on - strandat 1698.690 kb on - strandat 1699.180 kb on - strandat 1699.180 kb on - strand, within Dsui_1617at 1699.352 kb on + strandat 1699.352 kb on + strandat 1699.390 kb on - strandat 1699.483 kb on + strandat 1699.662 kb on - strandat 1699.678 kb on - strandat 1699.692 kb on + strand, within Dsui_1618at 1699.773 kb on - strandat 1699.784 kb on + strand, within Dsui_1618at 1699.869 kb on + strand, within Dsui_1618at 1699.879 kb on + strand, within Dsui_1618at 1699.885 kb on + strand, within Dsui_1618at 1699.885 kb on + strand, within Dsui_1618at 1699.893 kb on - strandat 1699.929 kb on - strandat 1699.971 kb on - strandat 1699.991 kb on - strand, within Dsui_1618at 1700.048 kb on + strand, within Dsui_1618at 1700.095 kb on + strand, within Dsui_1618at 1700.328 kb on - strandat 1700.354 kb on - strandat 1700.374 kb on - strand, within Dsui_1618at 1700.439 kb on - strand, within Dsui_1618at 1700.582 kb on - strandat 1700.837 kb on - strandat 1700.972 kb on - strandat 1700.981 kb on - strandat 1701.062 kb on + strandat 1701.070 kb on - strandat 1701.322 kb on - strandat 1701.322 kb on - strandat 1701.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,698,496 + +0.4
1,698,504 - +0.4
1,698,504 - -1.2
1,698,690 - -1.6
1,699,180 - -1.6
1,699,180 - Dsui_1617 0.66 -1.2
1,699,352 + +0.4
1,699,352 + -1.2
1,699,390 - +0.4
1,699,483 + +0.4
1,699,662 - +0.4
1,699,678 - -0.6
1,699,692 + Dsui_1618 0.19 +0.4
1,699,773 - -0.6
1,699,784 + Dsui_1618 0.26 +0.4
1,699,869 + Dsui_1618 0.33 +0.4
1,699,879 + Dsui_1618 0.34 +0.4
1,699,885 + Dsui_1618 0.34 -1.9
1,699,885 + Dsui_1618 0.34 -2.9
1,699,893 - +0.4
1,699,929 - -1.6
1,699,971 - +0.4
1,699,991 - Dsui_1618 0.43 -1.9
1,700,048 + Dsui_1618 0.47 -1.9
1,700,095 + Dsui_1618 0.51 -1.2
1,700,328 - -0.6
1,700,354 - +0.4
1,700,374 - Dsui_1618 0.73 -2.2
1,700,439 - Dsui_1618 0.78 -0.6
1,700,582 - -1.2
1,700,837 - +0.4
1,700,972 - -0.6
1,700,981 - -2.2
1,701,062 + -3.3
1,701,070 - -1.2
1,701,322 - +0.4
1,701,322 - +0.4
1,701,350 - +0.4

Or see this region's nucleotide sequence