Strain Fitness in Dechlorosoma suillum PS around Dsui_1443

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1442 and Dsui_1443 are separated by 96 nucleotidesDsui_1443 and Dsui_1444 are separated by 233 nucleotidesDsui_1444 and Dsui_1445 are separated by 51 nucleotides Dsui_1442: Dsui_1442 - putative efflux protein, MATE family, at 1,496,678 to 1,498,042 _1442 Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455 _1443 Dsui_1444: Dsui_1444 - Protein of unknown function (DUF2889), at 1,499,689 to 1,500,240 _1444 Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452 _1445 Position (kb) 1498 1499 1500Strain fitness (log2 ratio) -3 -2 -1 0 1at 1497.159 kb on - strandat 1497.430 kb on + strand, within Dsui_1442at 1497.465 kb on + strandat 1497.528 kb on - strandat 1497.558 kb on - strandat 1497.729 kb on - strand, within Dsui_1442at 1498.022 kb on - strandat 1498.104 kb on - strandat 1498.240 kb on - strandat 1498.274 kb on - strand, within Dsui_1443at 1498.578 kb on + strand, within Dsui_1443at 1498.607 kb on + strand, within Dsui_1443at 1498.649 kb on + strand, within Dsui_1443at 1498.791 kb on + strand, within Dsui_1443at 1498.825 kb on + strand, within Dsui_1443at 1498.833 kb on - strand, within Dsui_1443at 1499.021 kb on + strand, within Dsui_1443at 1499.251 kb on + strand, within Dsui_1443at 1499.277 kb on + strand, within Dsui_1443at 1499.331 kb on - strandat 1499.662 kb on - strandat 1499.828 kb on + strand, within Dsui_1444at 1499.864 kb on + strand, within Dsui_1444at 1499.929 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.976 kb on - strandat 1499.976 kb on - strand, within Dsui_1444at 1499.986 kb on + strand, within Dsui_1444at 1499.987 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.069 kb on + strand, within Dsui_1444at 1500.102 kb on - strandat 1500.193 kb on + strandat 1500.201 kb on - strandat 1500.201 kb on - strandat 1500.243 kb on - strandat 1500.249 kb on + strandat 1500.249 kb on + strandat 1500.312 kb on + strandat 1500.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,497,159 - -0.5
1,497,430 + Dsui_1442 0.55 -1.8
1,497,465 + +0.5
1,497,528 - +0.5
1,497,558 - +0.5
1,497,729 - Dsui_1442 0.77 -1.1
1,498,022 - -1.1
1,498,104 - +0.5
1,498,240 - +0.5
1,498,274 - Dsui_1443 0.10 -0.5
1,498,578 + Dsui_1443 0.33 -0.5
1,498,607 + Dsui_1443 0.36 -0.5
1,498,649 + Dsui_1443 0.39 -2.1
1,498,791 + Dsui_1443 0.50 -0.5
1,498,825 + Dsui_1443 0.52 -1.1
1,498,833 - Dsui_1443 0.53 -1.5
1,499,021 + Dsui_1443 0.67 +0.5
1,499,251 + Dsui_1443 0.84 +0.5
1,499,277 + Dsui_1443 0.86 -0.0
1,499,331 - -1.8
1,499,662 - +0.5
1,499,828 + Dsui_1444 0.25 -0.1
1,499,864 + Dsui_1444 0.32 -0.8
1,499,929 + Dsui_1444 0.43 -0.2
1,499,939 + Dsui_1444 0.45 -0.2
1,499,939 + Dsui_1444 0.45 -0.1
1,499,939 + Dsui_1444 0.45 -0.3
1,499,939 + Dsui_1444 0.45 +0.1
1,499,968 + Dsui_1444 0.51 -0.0
1,499,968 + Dsui_1444 0.51 -0.4
1,499,976 - +0.5
1,499,976 - Dsui_1444 0.52 -1.1
1,499,986 + Dsui_1444 0.54 -0.2
1,499,987 + Dsui_1444 0.54 -0.0
1,500,040 + Dsui_1444 0.64 -0.3
1,500,040 + Dsui_1444 0.64 -0.2
1,500,058 - Dsui_1444 0.67 -1.1
1,500,058 - Dsui_1444 0.67 -1.5
1,500,069 + Dsui_1444 0.69 +0.0
1,500,102 - +0.5
1,500,193 + -0.1
1,500,201 - -0.5
1,500,201 - +0.5
1,500,243 - +0.5
1,500,249 + -2.8
1,500,249 + -3.3
1,500,312 + -1.8
1,500,362 - +0.5

Or see this region's nucleotide sequence