Strain Fitness in Dechlorosoma suillum PS around Dsui_1370

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1368 and Dsui_1369 are separated by 50 nucleotidesDsui_1369 and Dsui_1370 are separated by 141 nucleotidesDsui_1370 and Dsui_1371 are separated by 103 nucleotides Dsui_1368: Dsui_1368 - hypothetical protein, at 1,422,030 to 1,422,866 _1368 Dsui_1369: Dsui_1369 - hypothetical protein, at 1,422,917 to 1,423,207 _1369 Dsui_1370: Dsui_1370 - putative permease, DMT superfamily, at 1,423,349 to 1,424,251 _1370 Dsui_1371: Dsui_1371 - transcriptional regulator, at 1,424,355 to 1,425,254 _1371 Position (kb) 1423 1424 1425Strain fitness (log2 ratio) -2 -1 0 1at 1422.350 kb on - strandat 1422.453 kb on + strand, within Dsui_1368at 1422.466 kb on - strand, within Dsui_1368at 1422.569 kb on + strandat 1422.569 kb on + strand, within Dsui_1368at 1422.667 kb on - strandat 1422.713 kb on - strandat 1422.715 kb on + strandat 1422.743 kb on + strand, within Dsui_1368at 1422.743 kb on + strand, within Dsui_1368at 1422.751 kb on - strandat 1422.804 kb on + strandat 1422.812 kb on - strandat 1422.827 kb on + strandat 1422.904 kb on - strandat 1422.929 kb on + strandat 1423.056 kb on + strandat 1423.086 kb on + strand, within Dsui_1369at 1423.108 kb on + strand, within Dsui_1369at 1423.115 kb on + strandat 1423.116 kb on - strand, within Dsui_1369at 1423.116 kb on - strandat 1423.169 kb on + strandat 1423.202 kb on + strandat 1423.217 kb on - strandat 1423.224 kb on - strandat 1423.297 kb on + strandat 1423.369 kb on + strandat 1423.472 kb on - strandat 1423.496 kb on + strand, within Dsui_1370at 1423.557 kb on + strandat 1423.565 kb on - strand, within Dsui_1370at 1423.569 kb on - strand, within Dsui_1370at 1423.613 kb on - strand, within Dsui_1370at 1423.641 kb on - strand, within Dsui_1370at 1423.772 kb on - strandat 1423.828 kb on - strandat 1423.943 kb on + strand, within Dsui_1370at 1423.953 kb on + strand, within Dsui_1370at 1423.966 kb on - strand, within Dsui_1370at 1423.971 kb on - strand, within Dsui_1370at 1424.107 kb on + strand, within Dsui_1370at 1424.135 kb on + strandat 1424.156 kb on - strandat 1424.164 kb on + strandat 1424.258 kb on + strandat 1424.286 kb on - strandat 1424.289 kb on + strandat 1424.444 kb on - strandat 1424.457 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.646 kb on - strandat 1424.684 kb on - strand, within Dsui_1371at 1424.707 kb on + strand, within Dsui_1371at 1424.730 kb on + strand, within Dsui_1371at 1424.866 kb on - strand, within Dsui_1371at 1424.900 kb on + strand, within Dsui_1371at 1424.921 kb on - strand, within Dsui_1371at 1424.958 kb on + strand, within Dsui_1371at 1424.966 kb on - strand, within Dsui_1371at 1425.040 kb on + strand, within Dsui_1371at 1425.056 kb on - strand, within Dsui_1371at 1425.060 kb on + strand, within Dsui_1371at 1425.138 kb on - strand, within Dsui_1371at 1425.142 kb on - strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,422,350 - +0.4
1,422,453 + Dsui_1368 0.51 -1.2
1,422,466 - Dsui_1368 0.52 -1.2
1,422,569 + -0.6
1,422,569 + Dsui_1368 0.64 -1.2
1,422,667 - +0.4
1,422,713 - +0.4
1,422,715 + +0.4
1,422,743 + Dsui_1368 0.85 +0.4
1,422,743 + Dsui_1368 0.85 +0.4
1,422,751 - +0.4
1,422,804 + -1.6
1,422,812 - -0.6
1,422,827 + +0.4
1,422,904 - -0.6
1,422,929 + +0.4
1,423,056 + +0.4
1,423,086 + Dsui_1369 0.58 -0.6
1,423,108 + Dsui_1369 0.66 +0.4
1,423,115 + -1.9
1,423,116 - Dsui_1369 0.68 -1.6
1,423,116 - -0.6
1,423,169 + -0.6
1,423,202 + -1.2
1,423,217 - -0.6
1,423,224 - -2.6
1,423,297 + +0.4
1,423,369 + -1.2
1,423,472 - +0.4
1,423,496 + Dsui_1370 0.16 -1.2
1,423,557 + +0.4
1,423,565 - Dsui_1370 0.24 -2.4
1,423,569 - Dsui_1370 0.24 -1.2
1,423,613 - Dsui_1370 0.29 +0.4
1,423,641 - Dsui_1370 0.32 +0.4
1,423,772 - +0.4
1,423,828 - -0.6
1,423,943 + Dsui_1370 0.66 -1.6
1,423,953 + Dsui_1370 0.67 -1.2
1,423,966 - Dsui_1370 0.68 -1.9
1,423,971 - Dsui_1370 0.69 -1.6
1,424,107 + Dsui_1370 0.84 -0.6
1,424,135 + +0.4
1,424,156 - -0.6
1,424,164 + +0.4
1,424,258 + +0.4
1,424,286 - +0.4
1,424,289 + +0.4
1,424,444 - +0.4
1,424,457 + Dsui_1371 0.11 -0.3
1,424,638 + Dsui_1371 0.31 -0.5
1,424,638 + Dsui_1371 0.31 -0.2
1,424,646 - +0.4
1,424,684 - Dsui_1371 0.37 -0.6
1,424,707 + Dsui_1371 0.39 +0.1
1,424,730 + Dsui_1371 0.42 -0.2
1,424,866 - Dsui_1371 0.57 +0.4
1,424,900 + Dsui_1371 0.61 -0.2
1,424,921 - Dsui_1371 0.63 +0.4
1,424,958 + Dsui_1371 0.67 -0.2
1,424,966 - Dsui_1371 0.68 -1.9
1,425,040 + Dsui_1371 0.76 -0.4
1,425,056 - Dsui_1371 0.78 -2.2
1,425,060 + Dsui_1371 0.78 -0.3
1,425,138 - Dsui_1371 0.87 -0.6
1,425,142 - +0.4
1,425,210 + -0.2
1,425,210 + -0.5
1,425,210 + -0.5
1,425,218 - +0.1

Or see this region's nucleotide sequence