Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1354 and Dsui_1355 are separated by 177 nucleotides Dsui_1355 and Dsui_1356 overlap by 109 nucleotides Dsui_1356 and Dsui_1357 are separated by 30 nucleotides Dsui_1357 and Dsui_1358 are separated by 42 nucleotides
Dsui_1354: Dsui_1354 - transcriptional regulator with HTH domain and aminotransferase domain, at 1,409,814 to 1,411,253
_1354
Dsui_1355: Dsui_1355 - hypothetical protein, at 1,411,431 to 1,411,871
_1355
Dsui_1356: Dsui_1356 - hypothetical protein, at 1,411,763 to 1,412,128
_1356
Dsui_1357: Dsui_1357 - hypothetical protein, at 1,412,159 to 1,412,290
_1357
Dsui_1358: Dsui_1358 - metalloendopeptidase-like membrane protein, at 1,412,333 to 1,413,148
_1358
Position (kb)
1411
1412
1413 Strain fitness (log2 ratio)
-2
-1
0
1 at 1410.860 kb on - strand, within Dsui_1354 at 1410.883 kb on - strand, within Dsui_1354 at 1411.124 kb on + strand at 1411.132 kb on - strand at 1411.243 kb on - strand at 1411.256 kb on - strand at 1411.295 kb on - strand at 1411.319 kb on - strand at 1411.386 kb on - strand at 1411.395 kb on + strand at 1411.582 kb on - strand, within Dsui_1355 at 1411.634 kb on + strand, within Dsui_1355 at 1411.713 kb on - strand at 1411.750 kb on - strand at 1411.930 kb on - strand at 1411.982 kb on + strand, within Dsui_1356 at 1411.990 kb on - strand at 1412.054 kb on - strand, within Dsui_1356 at 1412.131 kb on - strand at 1412.149 kb on + strand at 1412.157 kb on - strand at 1412.216 kb on + strand, within Dsui_1357 at 1412.239 kb on + strand, within Dsui_1357 at 1412.253 kb on - strand, within Dsui_1357 at 1412.284 kb on + strand at 1412.296 kb on + strand at 1412.374 kb on + strand at 1412.397 kb on + strand at 1412.397 kb on + strand at 1412.407 kb on + strand at 1412.423 kb on - strand, within Dsui_1358 at 1412.469 kb on - strand at 1412.509 kb on - strand, within Dsui_1358 at 1412.594 kb on - strand, within Dsui_1358 at 1412.852 kb on - strand, within Dsui_1358 at 1412.852 kb on - strand, within Dsui_1358 at 1412.867 kb on - strand, within Dsui_1358 at 1412.886 kb on - strand, within Dsui_1358
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,410,860 - Dsui_1354 0.73 -0.3 1,410,883 - Dsui_1354 0.74 -1.1 1,411,124 + +0.4 1,411,132 - -1.1 1,411,243 - +1.1 1,411,256 - -1.2 1,411,295 - -0.6 1,411,319 - -1.2 1,411,386 - -1.6 1,411,395 + -1.2 1,411,582 - Dsui_1355 0.34 -0.6 1,411,634 + Dsui_1355 0.46 -1.2 1,411,713 - +0.4 1,411,750 - -0.6 1,411,930 - +0.4 1,411,982 + Dsui_1356 0.60 -0.6 1,411,990 - +0.4 1,412,054 - Dsui_1356 0.80 -2.4 1,412,131 - -0.6 1,412,149 + +0.7 1,412,157 - +1.4 1,412,216 + Dsui_1357 0.43 +0.0 1,412,239 + Dsui_1357 0.61 -0.1 1,412,253 - Dsui_1357 0.71 -1.2 1,412,284 + -0.2 1,412,296 + -0.0 1,412,374 + +1.1 1,412,397 + -1.6 1,412,397 + -2.2 1,412,407 + +0.1 1,412,423 - Dsui_1358 0.11 -0.5 1,412,469 - +0.4 1,412,509 - Dsui_1358 0.22 -0.4 1,412,594 - Dsui_1358 0.32 -0.4 1,412,852 - Dsui_1358 0.64 -0.2 1,412,852 - Dsui_1358 0.64 -0.4 1,412,867 - Dsui_1358 0.65 -0.5 1,412,886 - Dsui_1358 0.68 +0.9
Or see this region's nucleotide sequence