Strain Fitness in Dechlorosoma suillum PS around Dsui_1356

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1354 and Dsui_1355 are separated by 177 nucleotidesDsui_1355 and Dsui_1356 overlap by 109 nucleotidesDsui_1356 and Dsui_1357 are separated by 30 nucleotidesDsui_1357 and Dsui_1358 are separated by 42 nucleotides Dsui_1354: Dsui_1354 - transcriptional regulator with HTH domain and aminotransferase domain, at 1,409,814 to 1,411,253 _1354 Dsui_1355: Dsui_1355 - hypothetical protein, at 1,411,431 to 1,411,871 _1355 Dsui_1356: Dsui_1356 - hypothetical protein, at 1,411,763 to 1,412,128 _1356 Dsui_1357: Dsui_1357 - hypothetical protein, at 1,412,159 to 1,412,290 _1357 Dsui_1358: Dsui_1358 - metalloendopeptidase-like membrane protein, at 1,412,333 to 1,413,148 _1358 Position (kb) 1411 1412 1413Strain fitness (log2 ratio) -2 -1 0 1at 1410.860 kb on - strand, within Dsui_1354at 1410.883 kb on - strand, within Dsui_1354at 1411.124 kb on + strandat 1411.132 kb on - strandat 1411.243 kb on - strandat 1411.256 kb on - strandat 1411.295 kb on - strandat 1411.319 kb on - strandat 1411.386 kb on - strandat 1411.395 kb on + strandat 1411.582 kb on - strand, within Dsui_1355at 1411.634 kb on + strand, within Dsui_1355at 1411.713 kb on - strandat 1411.750 kb on - strandat 1411.930 kb on - strandat 1411.982 kb on + strand, within Dsui_1356at 1411.990 kb on - strandat 1412.054 kb on - strand, within Dsui_1356at 1412.131 kb on - strandat 1412.149 kb on + strandat 1412.157 kb on - strandat 1412.216 kb on + strand, within Dsui_1357at 1412.239 kb on + strand, within Dsui_1357at 1412.253 kb on - strand, within Dsui_1357at 1412.284 kb on + strandat 1412.296 kb on + strandat 1412.374 kb on + strandat 1412.397 kb on + strandat 1412.397 kb on + strandat 1412.407 kb on + strandat 1412.423 kb on - strand, within Dsui_1358at 1412.469 kb on - strandat 1412.509 kb on - strand, within Dsui_1358at 1412.594 kb on - strand, within Dsui_1358at 1412.852 kb on - strand, within Dsui_1358at 1412.852 kb on - strand, within Dsui_1358at 1412.867 kb on - strand, within Dsui_1358at 1412.886 kb on - strand, within Dsui_1358

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,410,860 - Dsui_1354 0.73 -0.3
1,410,883 - Dsui_1354 0.74 -1.1
1,411,124 + +0.4
1,411,132 - -1.1
1,411,243 - +1.1
1,411,256 - -1.2
1,411,295 - -0.6
1,411,319 - -1.2
1,411,386 - -1.6
1,411,395 + -1.2
1,411,582 - Dsui_1355 0.34 -0.6
1,411,634 + Dsui_1355 0.46 -1.2
1,411,713 - +0.4
1,411,750 - -0.6
1,411,930 - +0.4
1,411,982 + Dsui_1356 0.60 -0.6
1,411,990 - +0.4
1,412,054 - Dsui_1356 0.80 -2.4
1,412,131 - -0.6
1,412,149 + +0.7
1,412,157 - +1.4
1,412,216 + Dsui_1357 0.43 +0.0
1,412,239 + Dsui_1357 0.61 -0.1
1,412,253 - Dsui_1357 0.71 -1.2
1,412,284 + -0.2
1,412,296 + -0.0
1,412,374 + +1.1
1,412,397 + -1.6
1,412,397 + -2.2
1,412,407 + +0.1
1,412,423 - Dsui_1358 0.11 -0.5
1,412,469 - +0.4
1,412,509 - Dsui_1358 0.22 -0.4
1,412,594 - Dsui_1358 0.32 -0.4
1,412,852 - Dsui_1358 0.64 -0.2
1,412,852 - Dsui_1358 0.64 -0.4
1,412,867 - Dsui_1358 0.65 -0.5
1,412,886 - Dsui_1358 0.68 +0.9

Or see this region's nucleotide sequence