Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1147 and Dsui_1148 are separated by 10 nucleotides Dsui_1148 and Dsui_1149 are separated by 178 nucleotides Dsui_1149 and Dsui_1150 are separated by 24 nucleotides Dsui_1150 and Dsui_1151 are separated by 104 nucleotides
Dsui_1147: Dsui_1147 - PAS domain S-box, at 1,202,101 to 1,203,474
_1147
Dsui_1148: Dsui_1148 - putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain, at 1,203,485 to 1,203,973
_1148
Dsui_1149: Dsui_1149 - Zn-dependent protease with chaperone function, at 1,204,152 to 1,205,033
_1149
Dsui_1150: Dsui_1150 - Sigma 54 modulation protein / S30EA ribosomal protein, at 1,205,058 to 1,205,441
_1150
Dsui_1151: Dsui_1151 - transcriptional regulator, at 1,205,546 to 1,206,466
_1151
Position (kb)
1204
1205
1206 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1203.203 kb on + strand, within Dsui_1147 at 1203.295 kb on + strand at 1203.302 kb on - strand, within Dsui_1147 at 1203.313 kb on - strand, within Dsui_1147 at 1203.315 kb on + strand, within Dsui_1147 at 1203.346 kb on + strand at 1203.630 kb on + strand, within Dsui_1148 at 1203.650 kb on - strand, within Dsui_1148 at 1203.846 kb on - strand, within Dsui_1148 at 1203.890 kb on - strand, within Dsui_1148 at 1204.109 kb on + strand at 1204.427 kb on + strand, within Dsui_1149 at 1204.435 kb on - strand, within Dsui_1149 at 1204.447 kb on - strand, within Dsui_1149 at 1204.561 kb on - strand, within Dsui_1149 at 1204.605 kb on + strand, within Dsui_1149 at 1204.622 kb on + strand, within Dsui_1149 at 1204.820 kb on + strand, within Dsui_1149 at 1204.859 kb on + strand at 1204.976 kb on + strand at 1204.977 kb on + strand at 1205.001 kb on + strand at 1205.035 kb on + strand at 1205.269 kb on + strand, within Dsui_1150 at 1205.479 kb on + strand at 1205.479 kb on + strand at 1205.487 kb on - strand at 1205.582 kb on - strand at 1205.660 kb on + strand, within Dsui_1151 at 1205.680 kb on + strand, within Dsui_1151 at 1205.688 kb on + strand, within Dsui_1151 at 1205.707 kb on - strand, within Dsui_1151 at 1205.770 kb on + strand, within Dsui_1151 at 1205.770 kb on + strand, within Dsui_1151 at 1205.778 kb on - strand, within Dsui_1151 at 1205.824 kb on + strand, within Dsui_1151 at 1205.844 kb on + strand, within Dsui_1151 at 1205.873 kb on - strand at 1205.886 kb on - strand, within Dsui_1151 at 1205.931 kb on - strand, within Dsui_1151 at 1205.992 kb on - strand, within Dsui_1151 at 1205.992 kb on - strand, within Dsui_1151 at 1206.002 kb on - strand, within Dsui_1151
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,203,203 + Dsui_1147 0.80 -0.5 1,203,295 + +0.5 1,203,302 - Dsui_1147 0.87 -0.4 1,203,313 - Dsui_1147 0.88 +0.2 1,203,315 + Dsui_1147 0.88 +0.5 1,203,346 + -1.1 1,203,630 + Dsui_1148 0.30 -2.5 1,203,650 - Dsui_1148 0.34 -0.7 1,203,846 - Dsui_1148 0.74 -0.5 1,203,890 - Dsui_1148 0.83 -1.9 1,204,109 + -1.1 1,204,427 + Dsui_1149 0.31 -0.5 1,204,435 - Dsui_1149 0.32 -0.1 1,204,447 - Dsui_1149 0.33 +0.5 1,204,561 - Dsui_1149 0.46 -1.1 1,204,605 + Dsui_1149 0.51 -0.5 1,204,622 + Dsui_1149 0.53 -1.5 1,204,820 + Dsui_1149 0.76 -3.8 1,204,859 + +0.5 1,204,976 + -2.3 1,204,977 + -1.1 1,205,001 + -0.5 1,205,035 + -0.5 1,205,269 + Dsui_1150 0.55 +0.5 1,205,479 + +0.5 1,205,479 + -0.7 1,205,487 - +0.5 1,205,582 - -2.5 1,205,660 + Dsui_1151 0.12 -1.1 1,205,680 + Dsui_1151 0.15 -1.8 1,205,688 + Dsui_1151 0.15 -0.7 1,205,707 - Dsui_1151 0.17 +0.5 1,205,770 + Dsui_1151 0.24 -0.9 1,205,770 + Dsui_1151 0.24 -0.8 1,205,778 - Dsui_1151 0.25 -0.5 1,205,824 + Dsui_1151 0.30 -1.0 1,205,844 + Dsui_1151 0.32 -0.8 1,205,873 - -0.5 1,205,886 - Dsui_1151 0.37 -0.5 1,205,931 - Dsui_1151 0.42 -1.8 1,205,992 - Dsui_1151 0.48 -2.8 1,205,992 - Dsui_1151 0.48 -1.8 1,206,002 - Dsui_1151 0.50 -0.5
Or see this region's nucleotide sequence