Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1111 and Dsui_1112 are separated by 55 nucleotides Dsui_1112 and Dsui_1113 are separated by 77 nucleotides
Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740
_1111
Dsui_1112: Dsui_1112 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,158,796 to 1,160,124
_1112
Dsui_1113: Dsui_1113 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,160,202 to 1,161,038
_1113
Position (kb)
1158
1159
1160
1161 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1157.982 kb on - strand, within Dsui_1111 at 1158.316 kb on - strand, within Dsui_1111 at 1158.353 kb on + strand, within Dsui_1111 at 1158.407 kb on + strand, within Dsui_1111 at 1158.408 kb on + strand, within Dsui_1111 at 1158.454 kb on + strand, within Dsui_1111 at 1158.523 kb on + strand, within Dsui_1111 at 1158.613 kb on + strand, within Dsui_1111 at 1158.658 kb on - strand at 1158.686 kb on - strand at 1158.739 kb on + strand at 1158.754 kb on + strand at 1158.777 kb on + strand at 1158.786 kb on + strand at 1158.860 kb on + strand at 1158.895 kb on + strand at 1158.929 kb on + strand, within Dsui_1112 at 1159.008 kb on + strand, within Dsui_1112 at 1159.022 kb on + strand, within Dsui_1112 at 1159.135 kb on + strand, within Dsui_1112 at 1159.145 kb on + strand, within Dsui_1112 at 1159.148 kb on - strand, within Dsui_1112 at 1159.250 kb on + strand, within Dsui_1112 at 1159.298 kb on + strand, within Dsui_1112 at 1159.308 kb on + strand, within Dsui_1112 at 1159.533 kb on - strand, within Dsui_1112 at 1159.624 kb on + strand, within Dsui_1112 at 1159.771 kb on + strand, within Dsui_1112 at 1159.827 kb on + strand, within Dsui_1112 at 1159.878 kb on - strand, within Dsui_1112 at 1160.330 kb on + strand, within Dsui_1113 at 1160.511 kb on + strand, within Dsui_1113 at 1160.516 kb on + strand, within Dsui_1113 at 1160.534 kb on - strand, within Dsui_1113 at 1160.650 kb on + strand, within Dsui_1113 at 1160.709 kb on + strand, within Dsui_1113 at 1160.843 kb on + strand, within Dsui_1113 at 1160.920 kb on + strand, within Dsui_1113 at 1160.926 kb on - strand, within Dsui_1113 at 1160.962 kb on - strand at 1161.007 kb on - strand at 1161.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,157,982 - Dsui_1111 0.29 -1.8 1,158,316 - Dsui_1111 0.60 +0.5 1,158,353 + Dsui_1111 0.64 -1.5 1,158,407 + Dsui_1111 0.69 -1.1 1,158,408 + Dsui_1111 0.69 -0.5 1,158,454 + Dsui_1111 0.73 +0.5 1,158,523 + Dsui_1111 0.80 -1.8 1,158,613 + Dsui_1111 0.88 -0.5 1,158,658 - -3.2 1,158,686 - -0.5 1,158,739 + -1.5 1,158,754 + +0.5 1,158,777 + -0.5 1,158,786 + +0.5 1,158,860 + +0.5 1,158,895 + +0.5 1,158,929 + Dsui_1112 0.10 +0.5 1,159,008 + Dsui_1112 0.16 +0.5 1,159,022 + Dsui_1112 0.17 +0.5 1,159,135 + Dsui_1112 0.26 +0.5 1,159,145 + Dsui_1112 0.26 -1.1 1,159,148 - Dsui_1112 0.26 -0.5 1,159,250 + Dsui_1112 0.34 +0.5 1,159,298 + Dsui_1112 0.38 +0.5 1,159,308 + Dsui_1112 0.39 +0.5 1,159,533 - Dsui_1112 0.55 +0.5 1,159,624 + Dsui_1112 0.62 +0.5 1,159,771 + Dsui_1112 0.73 +0.5 1,159,827 + Dsui_1112 0.78 +0.5 1,159,878 - Dsui_1112 0.81 +0.5 1,160,330 + Dsui_1113 0.15 -0.5 1,160,511 + Dsui_1113 0.37 -0.5 1,160,516 + Dsui_1113 0.38 -1.5 1,160,534 - Dsui_1113 0.40 +0.5 1,160,650 + Dsui_1113 0.54 +0.5 1,160,709 + Dsui_1113 0.61 -2.1 1,160,843 + Dsui_1113 0.77 +0.5 1,160,920 + Dsui_1113 0.86 +0.5 1,160,926 - Dsui_1113 0.86 +0.5 1,160,962 - +0.5 1,161,007 - -0.5 1,161,044 - -1.8
Or see this region's nucleotide sequence