Strain Fitness in Dechlorosoma suillum PS around Dsui_1104

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1103 and Dsui_1104 are separated by 146 nucleotidesDsui_1104 and Dsui_1105 are separated by 64 nucleotides Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978 _1103 Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586 _1104 Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932 _1105 Position (kb) 1148 1149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1147.219 kb on + strand, within Dsui_1103at 1147.261 kb on + strandat 1147.398 kb on + strand, within Dsui_1103at 1147.398 kb on + strandat 1147.403 kb on + strand, within Dsui_1103at 1147.403 kb on + strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.411 kb on - strand, within Dsui_1103at 1147.416 kb on - strand, within Dsui_1103at 1147.462 kb on + strand, within Dsui_1103at 1147.558 kb on + strand, within Dsui_1103at 1147.566 kb on - strand, within Dsui_1103at 1147.585 kb on - strand, within Dsui_1103at 1147.639 kb on + strand, within Dsui_1103at 1147.781 kb on - strand, within Dsui_1103at 1147.782 kb on - strand, within Dsui_1103at 1147.788 kb on + strandat 1147.873 kb on - strandat 1147.885 kb on + strandat 1147.885 kb on + strandat 1147.893 kb on - strandat 1147.916 kb on + strandat 1147.921 kb on + strandat 1147.973 kb on + strandat 1147.976 kb on - strandat 1147.981 kb on - strandat 1148.224 kb on + strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.244 kb on + strand, within Dsui_1104at 1148.287 kb on - strandat 1148.344 kb on + strand, within Dsui_1104at 1148.405 kb on + strand, within Dsui_1104at 1148.424 kb on + strand, within Dsui_1104at 1148.438 kb on - strand, within Dsui_1104at 1148.708 kb on + strandat 1148.758 kb on - strandat 1148.787 kb on + strandat 1148.795 kb on - strandat 1148.843 kb on + strandat 1148.885 kb on - strandat 1148.950 kb on + strandat 1149.052 kb on + strand, within Dsui_1105at 1149.208 kb on + strand, within Dsui_1105at 1149.224 kb on - strand, within Dsui_1105at 1149.267 kb on + strand, within Dsui_1105at 1149.306 kb on + strand, within Dsui_1105at 1149.360 kb on + strand, within Dsui_1105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
1,147,219 + Dsui_1103 0.30 +1.5
1,147,261 + +0.5
1,147,398 + Dsui_1103 0.47 -0.1
1,147,398 + +0.5
1,147,403 + Dsui_1103 0.47 -1.1
1,147,403 + Dsui_1103 0.47 -0.5
1,147,406 - Dsui_1103 0.47 -0.1
1,147,406 - Dsui_1103 0.47 +0.2
1,147,406 - Dsui_1103 0.47 -0.2
1,147,411 - Dsui_1103 0.48 -2.4
1,147,416 - Dsui_1103 0.48 -0.2
1,147,462 + Dsui_1103 0.52 +0.5
1,147,558 + Dsui_1103 0.61 -1.5
1,147,566 - Dsui_1103 0.62 -0.0
1,147,585 - Dsui_1103 0.64 +0.1
1,147,639 + Dsui_1103 0.69 -2.9
1,147,781 - Dsui_1103 0.82 +0.0
1,147,782 - Dsui_1103 0.82 -0.1
1,147,788 + +0.5
1,147,873 - +0.5
1,147,885 + -0.5
1,147,885 + +0.5
1,147,893 - -0.1
1,147,916 + +0.5
1,147,921 + +0.5
1,147,973 + +0.5
1,147,976 - -0.2
1,147,981 - +2.0
1,148,224 + Dsui_1104 0.21 -1.5
1,148,232 - Dsui_1104 0.23 -1.1
1,148,232 - Dsui_1104 0.23 -0.5
1,148,232 - Dsui_1104 0.23 -2.3
1,148,244 + Dsui_1104 0.26 -0.5
1,148,287 - +0.5
1,148,344 + Dsui_1104 0.47 -0.5
1,148,405 + Dsui_1104 0.61 +0.5
1,148,424 + Dsui_1104 0.65 -2.5
1,148,438 - Dsui_1104 0.68 -1.5
1,148,708 + -1.8
1,148,758 - +0.5
1,148,787 + -0.5
1,148,795 - -0.5
1,148,843 + -0.5
1,148,885 - -0.5
1,148,950 + -0.5
1,149,052 + Dsui_1105 0.12 -1.8
1,149,208 + Dsui_1105 0.17 -2.3
1,149,224 - Dsui_1105 0.17 -0.5
1,149,267 + Dsui_1105 0.19 +0.5
1,149,306 + Dsui_1105 0.20 -0.5
1,149,360 + Dsui_1105 0.22 -1.8

Or see this region's nucleotide sequence