Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1103 and Dsui_1104 are separated by 146 nucleotides Dsui_1104 and Dsui_1105 are separated by 64 nucleotides
Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978
_1103
Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586
_1104
Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932
_1105
Position (kb)
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1147.219 kb on + strand, within Dsui_1103 at 1147.261 kb on + strand at 1147.398 kb on + strand, within Dsui_1103 at 1147.398 kb on + strand at 1147.403 kb on + strand, within Dsui_1103 at 1147.403 kb on + strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.411 kb on - strand, within Dsui_1103 at 1147.416 kb on - strand, within Dsui_1103 at 1147.462 kb on + strand, within Dsui_1103 at 1147.558 kb on + strand, within Dsui_1103 at 1147.566 kb on - strand, within Dsui_1103 at 1147.585 kb on - strand, within Dsui_1103 at 1147.639 kb on + strand, within Dsui_1103 at 1147.781 kb on - strand, within Dsui_1103 at 1147.782 kb on - strand, within Dsui_1103 at 1147.788 kb on + strand at 1147.873 kb on - strand at 1147.885 kb on + strand at 1147.885 kb on + strand at 1147.893 kb on - strand at 1147.916 kb on + strand at 1147.921 kb on + strand at 1147.973 kb on + strand at 1147.976 kb on - strand at 1147.981 kb on - strand at 1148.224 kb on + strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.244 kb on + strand, within Dsui_1104 at 1148.287 kb on - strand at 1148.344 kb on + strand, within Dsui_1104 at 1148.405 kb on + strand, within Dsui_1104 at 1148.424 kb on + strand, within Dsui_1104 at 1148.438 kb on - strand, within Dsui_1104 at 1148.708 kb on + strand at 1148.758 kb on - strand at 1148.787 kb on + strand at 1148.795 kb on - strand at 1148.843 kb on + strand at 1148.885 kb on - strand at 1148.950 kb on + strand at 1149.052 kb on + strand, within Dsui_1105 at 1149.208 kb on + strand, within Dsui_1105 at 1149.224 kb on - strand, within Dsui_1105 at 1149.267 kb on + strand, within Dsui_1105 at 1149.306 kb on + strand, within Dsui_1105 at 1149.360 kb on + strand, within Dsui_1105
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,147,219 + Dsui_1103 0.30 +1.5 1,147,261 + +0.5 1,147,398 + Dsui_1103 0.47 -0.1 1,147,398 + +0.5 1,147,403 + Dsui_1103 0.47 -1.1 1,147,403 + Dsui_1103 0.47 -0.5 1,147,406 - Dsui_1103 0.47 -0.1 1,147,406 - Dsui_1103 0.47 +0.2 1,147,406 - Dsui_1103 0.47 -0.2 1,147,411 - Dsui_1103 0.48 -2.4 1,147,416 - Dsui_1103 0.48 -0.2 1,147,462 + Dsui_1103 0.52 +0.5 1,147,558 + Dsui_1103 0.61 -1.5 1,147,566 - Dsui_1103 0.62 -0.0 1,147,585 - Dsui_1103 0.64 +0.1 1,147,639 + Dsui_1103 0.69 -2.9 1,147,781 - Dsui_1103 0.82 +0.0 1,147,782 - Dsui_1103 0.82 -0.1 1,147,788 + +0.5 1,147,873 - +0.5 1,147,885 + -0.5 1,147,885 + +0.5 1,147,893 - -0.1 1,147,916 + +0.5 1,147,921 + +0.5 1,147,973 + +0.5 1,147,976 - -0.2 1,147,981 - +2.0 1,148,224 + Dsui_1104 0.21 -1.5 1,148,232 - Dsui_1104 0.23 -1.1 1,148,232 - Dsui_1104 0.23 -0.5 1,148,232 - Dsui_1104 0.23 -2.3 1,148,244 + Dsui_1104 0.26 -0.5 1,148,287 - +0.5 1,148,344 + Dsui_1104 0.47 -0.5 1,148,405 + Dsui_1104 0.61 +0.5 1,148,424 + Dsui_1104 0.65 -2.5 1,148,438 - Dsui_1104 0.68 -1.5 1,148,708 + -1.8 1,148,758 - +0.5 1,148,787 + -0.5 1,148,795 - -0.5 1,148,843 + -0.5 1,148,885 - -0.5 1,148,950 + -0.5 1,149,052 + Dsui_1105 0.12 -1.8 1,149,208 + Dsui_1105 0.17 -2.3 1,149,224 - Dsui_1105 0.17 -0.5 1,149,267 + Dsui_1105 0.19 +0.5 1,149,306 + Dsui_1105 0.20 -0.5 1,149,360 + Dsui_1105 0.22 -1.8
Or see this region's nucleotide sequence