Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1057 and Dsui_1058 are separated by 214 nucleotides Dsui_1058 and Dsui_1059 are separated by 3 nucleotides Dsui_1059 and Dsui_1060 overlap by 4 nucleotides Dsui_1060 and Dsui_1061 are separated by 60 nucleotides
Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178
_1057
Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602
_1058
Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553
_1059
Dsui_1060: Dsui_1060 - putative ATPase (AAA+ superfamily), at 1,092,550 to 1,093,473
_1060
Dsui_1061: Dsui_1061 - membrane-bound lytic murein transglycosylase, at 1,093,534 to 1,094,772
_1061
Position (kb)
1091
1092
1093 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1091.279 kb on + strand at 1091.413 kb on + strand at 1091.461 kb on + strand, within Dsui_1058 at 1091.558 kb on + strand, within Dsui_1058 at 1091.573 kb on - strand, within Dsui_1058 at 1091.596 kb on + strand at 1091.596 kb on + strand at 1091.604 kb on - strand at 1092.282 kb on - strand, within Dsui_1059 at 1092.357 kb on - strand, within Dsui_1059 at 1092.374 kb on - strand at 1092.561 kb on + strand at 1093.045 kb on - strand, within Dsui_1060 at 1093.047 kb on - strand, within Dsui_1060 at 1093.115 kb on + strand at 1093.123 kb on - strand, within Dsui_1060 at 1093.272 kb on - strand, within Dsui_1060 at 1093.345 kb on - strand, within Dsui_1060 at 1093.367 kb on - strand, within Dsui_1060 at 1093.372 kb on - strand, within Dsui_1060 at 1093.471 kb on - strand at 1093.476 kb on - strand at 1093.477 kb on - strand at 1093.481 kb on + strand at 1093.481 kb on + strand at 1093.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,091,279 + -0.8 1,091,413 + +0.2 1,091,461 + Dsui_1058 0.32 +0.2 1,091,558 + Dsui_1058 0.79 +0.9 1,091,573 - Dsui_1058 0.86 +0.0 1,091,596 + -0.0 1,091,596 + +0.8 1,091,604 - -0.6 1,092,282 - Dsui_1059 0.71 -0.4 1,092,357 - Dsui_1059 0.79 -3.0 1,092,374 - -1.0 1,092,561 + -0.4 1,093,045 - Dsui_1060 0.54 -1.0 1,093,047 - Dsui_1060 0.54 -2.7 1,093,115 + +0.6 1,093,123 - Dsui_1060 0.62 -0.3 1,093,272 - Dsui_1060 0.78 -1.0 1,093,345 - Dsui_1060 0.86 -0.1 1,093,367 - Dsui_1060 0.88 -1.1 1,093,372 - Dsui_1060 0.89 -0.6 1,093,471 - -1.5 1,093,476 - +0.0 1,093,477 - +1.6 1,093,481 + +0.6 1,093,481 + +0.6 1,093,518 - +0.6
Or see this region's nucleotide sequence