Strain Fitness in Dechlorosoma suillum PS around Dsui_1059

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1057 and Dsui_1058 are separated by 214 nucleotidesDsui_1058 and Dsui_1059 are separated by 3 nucleotidesDsui_1059 and Dsui_1060 overlap by 4 nucleotidesDsui_1060 and Dsui_1061 are separated by 60 nucleotides Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178 _1057 Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602 _1058 Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553 _1059 Dsui_1060: Dsui_1060 - putative ATPase (AAA+ superfamily), at 1,092,550 to 1,093,473 _1060 Dsui_1061: Dsui_1061 - membrane-bound lytic murein transglycosylase, at 1,093,534 to 1,094,772 _1061 Position (kb) 1091 1092 1093Strain fitness (log2 ratio) -3 -2 -1 0 1at 1091.279 kb on + strandat 1091.413 kb on + strandat 1091.461 kb on + strand, within Dsui_1058at 1091.558 kb on + strand, within Dsui_1058at 1091.573 kb on - strand, within Dsui_1058at 1091.596 kb on + strandat 1091.596 kb on + strandat 1091.604 kb on - strandat 1092.282 kb on - strand, within Dsui_1059at 1092.357 kb on - strand, within Dsui_1059at 1092.374 kb on - strandat 1092.561 kb on + strandat 1093.045 kb on - strand, within Dsui_1060at 1093.047 kb on - strand, within Dsui_1060at 1093.115 kb on + strandat 1093.123 kb on - strand, within Dsui_1060at 1093.272 kb on - strand, within Dsui_1060at 1093.345 kb on - strand, within Dsui_1060at 1093.367 kb on - strand, within Dsui_1060at 1093.372 kb on - strand, within Dsui_1060at 1093.471 kb on - strandat 1093.476 kb on - strandat 1093.477 kb on - strandat 1093.481 kb on + strandat 1093.481 kb on + strandat 1093.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,091,279 + -0.8
1,091,413 + +0.2
1,091,461 + Dsui_1058 0.32 +0.2
1,091,558 + Dsui_1058 0.79 +0.9
1,091,573 - Dsui_1058 0.86 +0.0
1,091,596 + -0.0
1,091,596 + +0.8
1,091,604 - -0.6
1,092,282 - Dsui_1059 0.71 -0.4
1,092,357 - Dsui_1059 0.79 -3.0
1,092,374 - -1.0
1,092,561 + -0.4
1,093,045 - Dsui_1060 0.54 -1.0
1,093,047 - Dsui_1060 0.54 -2.7
1,093,115 + +0.6
1,093,123 - Dsui_1060 0.62 -0.3
1,093,272 - Dsui_1060 0.78 -1.0
1,093,345 - Dsui_1060 0.86 -0.1
1,093,367 - Dsui_1060 0.88 -1.1
1,093,372 - Dsui_1060 0.89 -0.6
1,093,471 - -1.5
1,093,476 - +0.0
1,093,477 - +1.6
1,093,481 + +0.6
1,093,481 + +0.6
1,093,518 - +0.6

Or see this region's nucleotide sequence