Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0973 and Dsui_0974 are separated by 85 nucleotides Dsui_0974 and Dsui_0975 are separated by 150 nucleotides Dsui_0975 and Dsui_0976 are separated by 70 nucleotides
Dsui_0973: Dsui_0973 - putative transcriptional regulator, at 999,959 to 1,000,429
_0973
Dsui_0974: Dsui_0974 - hypothetical protein, at 1,000,515 to 1,000,979
_0974
Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302
_0975
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Position (kb)
1001
1002
1003 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1000.172 kb on - strand, within Dsui_0973 at 1000.230 kb on - strand, within Dsui_0973 at 1000.308 kb on - strand, within Dsui_0973 at 1000.363 kb on + strand, within Dsui_0973 at 1000.383 kb on - strand at 1000.682 kb on + strand, within Dsui_0974 at 1000.806 kb on + strand, within Dsui_0974 at 1000.904 kb on + strand, within Dsui_0974 at 1000.919 kb on - strand, within Dsui_0974 at 1000.974 kb on + strand at 1000.982 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.069 kb on + strand at 1001.083 kb on + strand at 1001.091 kb on - strand at 1001.101 kb on - strand at 1001.151 kb on - strand at 1001.180 kb on + strand at 1001.213 kb on - strand at 1001.234 kb on + strand at 1001.331 kb on + strand, within Dsui_0975 at 1001.331 kb on + strand, within Dsui_0975 at 1001.339 kb on - strand at 1001.351 kb on + strand, within Dsui_0975 at 1001.421 kb on - strand, within Dsui_0975 at 1001.466 kb on + strand, within Dsui_0975 at 1001.516 kb on - strand, within Dsui_0975 at 1001.566 kb on - strand, within Dsui_0975 at 1001.578 kb on - strand, within Dsui_0975 at 1001.651 kb on + strand, within Dsui_0975 at 1001.746 kb on + strand, within Dsui_0975 at 1001.770 kb on + strand, within Dsui_0975 at 1001.954 kb on + strand, within Dsui_0975 at 1002.051 kb on + strand, within Dsui_0975 at 1002.259 kb on + strand at 1002.600 kb on + strand, within Dsui_0976 at 1002.626 kb on + strand, within Dsui_0976 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,000,172 - Dsui_0973 0.45 +0.6 1,000,230 - Dsui_0973 0.58 -1.4 1,000,308 - Dsui_0973 0.74 -1.0 1,000,363 + Dsui_0973 0.86 +0.0 1,000,383 - +0.6 1,000,682 + Dsui_0974 0.36 -1.7 1,000,806 + Dsui_0974 0.63 -0.4 1,000,904 + Dsui_0974 0.84 -1.4 1,000,919 - Dsui_0974 0.87 -0.4 1,000,974 + -1.0 1,000,982 - +0.6 1,001,049 - +0.6 1,001,049 - +0.6 1,001,049 - -0.4 1,001,069 + -1.4 1,001,083 + -1.0 1,001,091 - -1.0 1,001,101 - -0.4 1,001,151 - +0.6 1,001,180 + -1.0 1,001,213 - -1.0 1,001,234 + -0.4 1,001,331 + Dsui_0975 0.17 -1.4 1,001,331 + Dsui_0975 0.17 -1.4 1,001,339 - +0.6 1,001,351 + Dsui_0975 0.19 -2.0 1,001,421 - Dsui_0975 0.25 +0.6 1,001,466 + Dsui_0975 0.29 -1.7 1,001,516 - Dsui_0975 0.33 +0.6 1,001,566 - Dsui_0975 0.37 -2.6 1,001,578 - Dsui_0975 0.38 -0.4 1,001,651 + Dsui_0975 0.44 -0.4 1,001,746 + Dsui_0975 0.53 +0.6 1,001,770 + Dsui_0975 0.55 +0.6 1,001,954 + Dsui_0975 0.70 -1.2 1,002,051 + Dsui_0975 0.79 -1.4 1,002,259 + -1.4 1,002,600 + Dsui_0976 0.19 +1.9 1,002,626 + Dsui_0976 0.21 +0.4 1,002,689 + Dsui_0976 0.27 -0.4 1,002,884 - Dsui_0976 0.43 -0.4 1,002,906 - Dsui_0976 0.45 +0.6 1,002,943 - Dsui_0976 0.48 -1.0 1,002,955 + Dsui_0976 0.49 +1.6 1,003,072 - Dsui_0976 0.59 +0.6 1,003,157 - Dsui_0976 0.66 -1.4 1,003,171 + Dsui_0976 0.68 -1.0 1,003,172 - +0.6 1,003,244 - Dsui_0976 0.74 -0.4 1,003,301 + Dsui_0976 0.79 -0.0
Or see this region's nucleotide sequence