Strain Fitness in Dechlorosoma suillum PS around Dsui_0620

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0619 and Dsui_0620 are separated by 96 nucleotidesDsui_0620 and Dsui_0621 are separated by 2 nucleotidesDsui_0621 and Dsui_0622 are separated by 185 nucleotides Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690 _0619 Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710 _0620 Dsui_0621: Dsui_0621 - RNA polymerase sigma factor, sigma-70 family, at 616,713 to 617,210 _0621 Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001 _0622 Position (kb) 615 616 617Strain fitness (log2 ratio) -2 -1 0 1at 615.051 kb on - strand, within Dsui_0619at 615.073 kb on + strand, within Dsui_0619at 615.125 kb on - strand, within Dsui_0619at 615.176 kb on - strandat 615.194 kb on - strand, within Dsui_0619at 615.418 kb on + strand, within Dsui_0619at 615.501 kb on - strandat 615.509 kb on - strandat 615.600 kb on - strandat 615.623 kb on + strandat 615.623 kb on + strandat 615.696 kb on + strandat 615.708 kb on + strandat 615.813 kb on + strandat 615.823 kb on + strandat 615.973 kb on - strand, within Dsui_0620at 615.983 kb on - strand, within Dsui_0620at 615.988 kb on + strandat 615.990 kb on - strandat 616.067 kb on + strand, within Dsui_0620at 616.072 kb on + strand, within Dsui_0620at 616.080 kb on - strand, within Dsui_0620at 616.137 kb on - strand, within Dsui_0620at 616.179 kb on - strand, within Dsui_0620at 616.226 kb on - strand, within Dsui_0620at 616.231 kb on + strand, within Dsui_0620at 616.290 kb on + strand, within Dsui_0620at 616.533 kb on + strand, within Dsui_0620at 616.681 kb on + strandat 616.825 kb on - strandat 617.055 kb on + strand, within Dsui_0621at 617.108 kb on + strand, within Dsui_0621at 617.149 kb on - strand, within Dsui_0621at 617.177 kb on + strandat 617.185 kb on - strandat 617.187 kb on + strandat 617.430 kb on - strandat 617.518 kb on + strand, within Dsui_0622at 617.550 kb on - strand, within Dsui_0622at 617.621 kb on + strand, within Dsui_0622at 617.634 kb on - strand, within Dsui_0622at 617.639 kb on - strand, within Dsui_0622at 617.687 kb on - strand, within Dsui_0622

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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615,051 - Dsui_0619 0.73 -1.1
615,073 + Dsui_0619 0.74 -1.5
615,125 - Dsui_0619 0.76 -0.5
615,176 - +0.5
615,194 - Dsui_0619 0.79 -1.5
615,418 + Dsui_0619 0.88 +0.5
615,501 - +0.5
615,509 - -1.5
615,600 - -1.5
615,623 + +0.5
615,623 + -1.5
615,696 + -2.7
615,708 + -1.1
615,813 + +0.5
615,823 + -1.8
615,973 - Dsui_0620 0.20 -1.1
615,983 - Dsui_0620 0.21 -1.5
615,988 + +0.5
615,990 - +0.5
616,067 + Dsui_0620 0.30 +0.5
616,072 + Dsui_0620 0.31 -2.3
616,080 - Dsui_0620 0.32 -1.5
616,137 - Dsui_0620 0.38 -2.2
616,179 - Dsui_0620 0.42 -0.5
616,226 - Dsui_0620 0.48 -1.5
616,231 + Dsui_0620 0.48 +0.5
616,290 + Dsui_0620 0.54 +0.5
616,533 + Dsui_0620 0.81 -1.1
616,681 + -0.5
616,825 - +0.5
617,055 + Dsui_0621 0.69 -1.1
617,108 + Dsui_0621 0.79 +0.5
617,149 - Dsui_0621 0.88 -1.8
617,177 + -2.5
617,185 - -1.3
617,187 + +0.5
617,430 - +0.5
617,518 + Dsui_0622 0.20 -1.1
617,550 - Dsui_0622 0.25 +0.5
617,621 + Dsui_0622 0.37 -1.4
617,634 - Dsui_0622 0.39 -1.5
617,639 - Dsui_0622 0.40 -0.5
617,687 - Dsui_0622 0.48 -2.3

Or see this region's nucleotide sequence