Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0555 and Dsui_0556 are separated by 21 nucleotides Dsui_0556 and Dsui_0557 are separated by 26 nucleotides Dsui_0557 and Dsui_0558 overlap by 33 nucleotides Dsui_0558 and Dsui_0559 are separated by 180 nucleotides Dsui_0559 and Dsui_0560 are separated by 365 nucleotides
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Dsui_0556: Dsui_0556 - ferredoxin III, nif-specific, at 557,806 to 558,105
_0556
Dsui_0557: Dsui_0557 - NifQ, at 558,132 to 558,557
_0557
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Dsui_0559: Dsui_0559 - alkylphosphonate utilization operon protein PhnA, at 560,154 to 560,495
_0559
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.534 kb on - strand, within Dsui_0555 at 557.641 kb on + strand, within Dsui_0555 at 557.753 kb on + strand at 557.770 kb on + strand at 557.829 kb on + strand at 557.848 kb on + strand, within Dsui_0556 at 558.041 kb on + strand, within Dsui_0556 at 558.083 kb on + strand at 558.247 kb on - strand, within Dsui_0557 at 558.323 kb on - strand, within Dsui_0557 at 558.393 kb on + strand, within Dsui_0557 at 558.441 kb on + strand, within Dsui_0557 at 558.477 kb on - strand, within Dsui_0557 at 558.540 kb on - strand at 558.581 kb on - strand at 558.581 kb on - strand at 558.629 kb on + strand at 559.118 kb on - strand, within Dsui_0558 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand at 559.593 kb on + strand at 559.601 kb on - strand at 559.651 kb on - strand at 559.651 kb on - strand at 559.674 kb on - strand at 559.705 kb on - strand, within Dsui_0558 at 559.901 kb on + strand at 559.903 kb on - strand at 559.970 kb on - strand at 560.050 kb on - strand at 560.052 kb on + strand at 560.073 kb on + strand at 560.115 kb on - strand at 560.152 kb on + strand at 560.160 kb on - strand at 560.160 kb on - strand at 560.183 kb on - strand at 560.206 kb on - strand, within Dsui_0559 at 560.250 kb on - strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.295 kb on - strand, within Dsui_0559 at 560.372 kb on - strand, within Dsui_0559 at 560.403 kb on - strand, within Dsui_0559 at 560.486 kb on + strand at 560.494 kb on - strand at 560.494 kb on - strand at 560.499 kb on + strand at 560.499 kb on - strand at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 557,534 - Dsui_0555 0.34 -1.5 557,641 + Dsui_0555 0.62 -0.5 557,753 + -0.5 557,770 + +0.5 557,829 + -0.5 557,848 + Dsui_0556 0.14 -0.5 558,041 + Dsui_0556 0.78 +0.5 558,083 + -0.5 558,247 - Dsui_0557 0.27 -1.1 558,323 - Dsui_0557 0.45 +0.5 558,393 + Dsui_0557 0.61 -1.5 558,441 + Dsui_0557 0.73 -0.5 558,477 - Dsui_0557 0.81 +0.5 558,540 - +0.5 558,581 - -0.5 558,581 - +0.5 558,629 + -2.3 559,118 - Dsui_0558 0.41 -1.5 559,172 - Dsui_0558 0.45 +0.5 559,224 + Dsui_0558 0.48 +0.5 559,284 + Dsui_0558 0.52 -2.3 559,321 - Dsui_0558 0.55 -1.5 559,362 - Dsui_0558 0.58 -1.5 559,368 - Dsui_0558 0.58 -1.1 559,535 + -1.1 559,543 - -1.1 559,593 + +0.5 559,601 - +0.5 559,651 - +0.5 559,651 - +0.5 559,674 - +0.5 559,705 - Dsui_0558 0.81 -0.5 559,901 + +0.5 559,903 - -0.5 559,970 - -1.5 560,050 - -1.5 560,052 + -2.8 560,073 + +0.5 560,115 - +0.1 560,152 + +0.5 560,160 - -0.7 560,160 - -1.3 560,183 - -0.5 560,206 - Dsui_0559 0.15 -1.5 560,250 - Dsui_0559 0.28 -0.1 560,287 + Dsui_0559 0.39 +0.5 560,287 + Dsui_0559 0.39 -2.5 560,295 - Dsui_0559 0.41 +0.4 560,372 - Dsui_0559 0.64 +0.1 560,403 - Dsui_0559 0.73 -0.5 560,486 + +0.5 560,494 - +0.0 560,494 - +0.2 560,499 + -0.5 560,499 - -0.3 560,615 - +0.5 560,656 + +0.5 560,656 + -0.5 560,773 + -1.5 560,773 + +0.5 560,773 + -1.1 560,789 - -0.5 560,832 + -0.5 560,867 - -1.5 560,873 + -0.5 560,881 - +0.7 560,881 - -0.7 560,897 + -1.8 560,905 - Dsui_0560 0.10 +0.1 560,926 - Dsui_0560 0.15 +0.1
Or see this region's nucleotide sequence