Strain Fitness in Dechlorosoma suillum PS around Dsui_0506

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0504 and Dsui_0505 are separated by 55 nucleotidesDsui_0505 and Dsui_0506 are separated by 51 nucleotidesDsui_0506 and Dsui_0507 are separated by 301 nucleotidesDsui_0507 and Dsui_0508 are separated by 1 nucleotides Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375 _0504 Dsui_0505: Dsui_0505 - 7-cyano-7-deazaguanine reductase, at 507,431 to 508,264 _0505 Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517 _0506 Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067 _0507 Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594 _0508 Position (kb) 508 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1at 507.351 kb on + strandat 507.352 kb on + strandat 507.357 kb on + strandat 507.365 kb on - strandat 507.369 kb on + strandat 507.369 kb on + strandat 507.503 kb on - strandat 507.622 kb on + strand, within Dsui_0505at 507.622 kb on + strand, within Dsui_0505at 507.640 kb on - strandat 507.669 kb on + strand, within Dsui_0505at 507.669 kb on + strand, within Dsui_0505at 507.677 kb on - strand, within Dsui_0505at 507.693 kb on + strand, within Dsui_0505at 507.706 kb on + strand, within Dsui_0505at 507.714 kb on + strand, within Dsui_0505at 507.721 kb on + strand, within Dsui_0505at 507.728 kb on + strand, within Dsui_0505at 507.871 kb on - strandat 507.967 kb on + strand, within Dsui_0505at 508.034 kb on - strand, within Dsui_0505at 508.037 kb on + strand, within Dsui_0505at 508.105 kb on + strand, within Dsui_0505at 508.148 kb on + strand, within Dsui_0505at 508.153 kb on + strand, within Dsui_0505at 508.161 kb on - strand, within Dsui_0505at 508.442 kb on - strandat 508.457 kb on + strandat 508.465 kb on - strandat 508.488 kb on - strandat 508.552 kb on + strand, within Dsui_0506at 508.559 kb on - strand, within Dsui_0506at 508.577 kb on - strand, within Dsui_0506at 508.599 kb on - strand, within Dsui_0506at 508.635 kb on + strand, within Dsui_0506at 508.649 kb on + strand, within Dsui_0506at 508.649 kb on + strand, within Dsui_0506at 508.657 kb on - strand, within Dsui_0506at 508.757 kb on - strand, within Dsui_0506at 508.895 kb on + strand, within Dsui_0506at 508.978 kb on - strand, within Dsui_0506at 508.993 kb on + strandat 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 509.065 kb on + strand, within Dsui_0506at 509.159 kb on - strand, within Dsui_0506at 509.238 kb on + strand, within Dsui_0506at 509.238 kb on + strand, within Dsui_0506at 509.246 kb on - strand, within Dsui_0506at 509.306 kb on + strand, within Dsui_0506at 509.306 kb on - strand, within Dsui_0506at 509.400 kb on - strand, within Dsui_0506at 509.407 kb on - strand, within Dsui_0506at 509.438 kb on + strand, within Dsui_0506at 509.443 kb on + strand, within Dsui_0506at 509.443 kb on + strand, within Dsui_0506at 509.443 kb on + strand, within Dsui_0506at 509.443 kb on + strand, within Dsui_0506at 509.443 kb on + strandat 509.459 kb on + strand, within Dsui_0506at 509.467 kb on - strand, within Dsui_0506at 509.490 kb on + strand, within Dsui_0506at 509.498 kb on - strand, within Dsui_0506at 509.498 kb on - strand, within Dsui_0506at 509.582 kb on + strand, within Dsui_0506at 509.670 kb on - strand, within Dsui_0506at 509.722 kb on - strand, within Dsui_0506at 509.751 kb on - strand, within Dsui_0506at 509.809 kb on - strand, within Dsui_0506at 509.814 kb on + strand, within Dsui_0506at 509.822 kb on - strand, within Dsui_0506at 509.932 kb on + strandat 509.932 kb on + strand, within Dsui_0506at 509.932 kb on + strand, within Dsui_0506at 509.935 kb on - strand, within Dsui_0506at 509.940 kb on - strand, within Dsui_0506at 509.980 kb on + strand, within Dsui_0506at 510.058 kb on - strand, within Dsui_0506at 510.097 kb on - strand, within Dsui_0506at 510.134 kb on - strand, within Dsui_0506at 510.139 kb on + strand, within Dsui_0506at 510.147 kb on - strand, within Dsui_0506at 510.282 kb on + strand, within Dsui_0506at 510.287 kb on + strandat 510.290 kb on - strand, within Dsui_0506at 510.325 kb on - strandat 510.334 kb on + strandat 510.334 kb on + strandat 510.342 kb on - strandat 510.361 kb on + strandat 510.361 kb on + strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.409 kb on + strandat 510.452 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.600 kb on - strandat 510.644 kb on + strandat 510.659 kb on + strandat 510.699 kb on - strandat 510.699 kb on - strandat 510.754 kb on + strandat 510.762 kb on - strandat 510.762 kb on - strandat 510.773 kb on - strandat 510.847 kb on - strand, within Dsui_0507at 510.879 kb on + strand, within Dsui_0507at 510.916 kb on + strand, within Dsui_0507at 510.979 kb on + strand, within Dsui_0507at 511.022 kb on - strand, within Dsui_0507at 511.072 kb on + strandat 511.314 kb on - strandat 511.317 kb on + strandat 511.366 kb on + strand, within Dsui_0508at 511.430 kb on + strand, within Dsui_0508at 511.464 kb on + strand, within Dsui_0508

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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507,351 + -0.6
507,352 + +0.4
507,357 + -1.1
507,365 - +0.5
507,369 + +0.4
507,369 + +0.2
507,503 - +0.4
507,622 + Dsui_0505 0.23 -2.1
507,622 + Dsui_0505 0.23 -1.1
507,640 - +0.4
507,669 + Dsui_0505 0.29 -1.4
507,669 + Dsui_0505 0.29 -1.3
507,677 - Dsui_0505 0.29 +0.4
507,693 + Dsui_0505 0.31 -1.1
507,706 + Dsui_0505 0.33 -1.3
507,714 + Dsui_0505 0.34 +0.2
507,721 + Dsui_0505 0.35 -0.6
507,728 + Dsui_0505 0.36 -0.8
507,871 - +0.4
507,967 + Dsui_0505 0.64 -1.1
508,034 - Dsui_0505 0.72 +0.4
508,037 + Dsui_0505 0.73 -0.6
508,105 + Dsui_0505 0.81 -0.8
508,148 + Dsui_0505 0.86 -1.5
508,153 + Dsui_0505 0.87 -1.2
508,161 - Dsui_0505 0.88 +0.4
508,442 - +0.4
508,457 + -0.2
508,465 - -0.5
508,488 - -0.3
508,552 + Dsui_0506 0.11 +0.4
508,559 - Dsui_0506 0.11 -1.1
508,577 - Dsui_0506 0.12 +0.7
508,599 - Dsui_0506 0.13 -0.1
508,635 + Dsui_0506 0.14 +0.4
508,649 + Dsui_0506 0.15 -0.3
508,649 + Dsui_0506 0.15 -1.1
508,657 - Dsui_0506 0.15 -1.1
508,757 - Dsui_0506 0.20 -1.1
508,895 + Dsui_0506 0.26 +0.4
508,978 - Dsui_0506 0.30 -0.5
508,993 + +0.4
508,993 + Dsui_0506 0.31 -0.3
508,993 + Dsui_0506 0.31 -0.6
508,993 + Dsui_0506 0.31 +0.4
508,993 + Dsui_0506 0.31 +0.4
509,065 + Dsui_0506 0.34 -1.1
509,159 - Dsui_0506 0.38 +0.3
509,238 + Dsui_0506 0.42 -1.1
509,238 + Dsui_0506 0.42 -0.3
509,246 - Dsui_0506 0.42 -2.1
509,306 + Dsui_0506 0.45 -0.6
509,306 - Dsui_0506 0.45 -1.4
509,400 - Dsui_0506 0.49 +0.4
509,407 - Dsui_0506 0.50 +0.0
509,438 + Dsui_0506 0.51 -1.1
509,443 + Dsui_0506 0.51 -0.6
509,443 + Dsui_0506 0.51 +0.4
509,443 + Dsui_0506 0.51 -2.1
509,443 + Dsui_0506 0.51 -1.1
509,443 + +0.4
509,459 + Dsui_0506 0.52 +0.4
509,467 - Dsui_0506 0.52 -0.2
509,490 + Dsui_0506 0.53 -0.6
509,498 - Dsui_0506 0.54 -0.4
509,498 - Dsui_0506 0.54 -0.2
509,582 + Dsui_0506 0.57 -2.6
509,670 - Dsui_0506 0.61 -0.3
509,722 - Dsui_0506 0.64 -0.7
509,751 - Dsui_0506 0.65 -1.3
509,809 - Dsui_0506 0.68 -1.4
509,814 + Dsui_0506 0.68 -1.9
509,822 - Dsui_0506 0.68 +0.4
509,932 + +0.4
509,932 + Dsui_0506 0.73 -3.0
509,932 + Dsui_0506 0.73 +0.4
509,935 - Dsui_0506 0.74 -0.3
509,940 - Dsui_0506 0.74 +0.0
509,980 + Dsui_0506 0.76 -1.6
510,058 - Dsui_0506 0.79 +0.8
510,097 - Dsui_0506 0.81 -0.4
510,134 - Dsui_0506 0.83 -1.4
510,139 + Dsui_0506 0.83 -2.1
510,147 - Dsui_0506 0.83 +0.4
510,282 + Dsui_0506 0.89 +0.4
510,287 + +0.4
510,290 - Dsui_0506 0.90 -1.5
510,325 - +0.6
510,334 + +0.4
510,334 + +0.4
510,342 - -0.3
510,361 + +0.4
510,361 + -2.4
510,369 - -0.7
510,369 - -0.2
510,369 - +1.4
510,369 - -0.9
510,369 - +0.4
510,409 + -0.6
510,452 + -2.9
510,512 + -2.9
510,512 + -0.6
510,512 + -1.6
510,512 + -0.6
510,600 - -1.3
510,644 + -1.1
510,659 + -0.6
510,699 - -1.1
510,699 - -1.3
510,754 + -1.6
510,762 - -1.1
510,762 - -1.1
510,773 - -0.6
510,847 - Dsui_0507 0.11 -1.1
510,879 + Dsui_0507 0.24 -1.1
510,916 + Dsui_0507 0.39 -0.6
510,979 + Dsui_0507 0.64 +0.4
511,022 - Dsui_0507 0.82 +0.4
511,072 + -1.6
511,314 - -1.6
511,317 + -0.6
511,366 + Dsui_0508 0.12 -3.0
511,430 + Dsui_0508 0.14 -2.4
511,464 + Dsui_0508 0.16 -2.6

Or see this region's nucleotide sequence