Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0453 and Dsui_0454 overlap by 17 nucleotides Dsui_0454 and Dsui_0455 are separated by 3 nucleotides Dsui_0455 and Dsui_0456 are separated by 90 nucleotides
Dsui_0453: Dsui_0453 - nicotinate/nicotinamide nucleotide adenylyltransferase, at 458,536 to 459,210
_0453
Dsui_0454: Dsui_0454 - hypothetical protein, at 459,194 to 460,024
_0454
Dsui_0455: Dsui_0455 - putative integral membrane protein, at 460,028 to 460,786
_0455
Dsui_0456: Dsui_0456 - homoserine kinase, Neisseria type, at 460,877 to 461,818
_0456
Position (kb) 460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 459.200 kb on - strand at 459.200 kb on - strand at 459.231 kb on - strand at 459.431 kb on - strand, within Dsui_0454 at 459.543 kb on - strand, within Dsui_0454 at 459.942 kb on - strand at 459.973 kb on - strand at 460.021 kb on + strand at 460.059 kb on + strand at 460.067 kb on - strand at 460.067 kb on - strand at 460.140 kb on + strand at 460.148 kb on - strand, within Dsui_0455 at 460.226 kb on - strand, within Dsui_0455 at 460.241 kb on - strand, within Dsui_0455 at 460.435 kb on + strand at 460.439 kb on - strand, within Dsui_0455 at 460.449 kb on - strand, within Dsui_0455 at 460.609 kb on - strand, within Dsui_0455 at 460.611 kb on + strand at 460.619 kb on - strand, within Dsui_0455 at 460.645 kb on - strand, within Dsui_0455 at 460.650 kb on + strand at 460.926 kb on - strand at 461.120 kb on - strand, within Dsui_0456 at 461.139 kb on - strand, within Dsui_0456 at 461.226 kb on + strand, within Dsui_0456 at 461.257 kb on - strand, within Dsui_0456 at 461.276 kb on + strand, within Dsui_0456 at 461.290 kb on - strand, within Dsui_0456 at 461.444 kb on + strand, within Dsui_0456 at 461.452 kb on - strand, within Dsui_0456 at 461.456 kb on + strand, within Dsui_0456 at 461.551 kb on + strand, within Dsui_0456 at 461.655 kb on + strand, within Dsui_0456
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 459,200 - -2.9 459,200 - -1.6 459,231 - -2.3 459,431 - Dsui_0454 0.29 -0.8 459,543 - Dsui_0454 0.42 -0.9 459,942 - -2.2 459,973 - -0.2 460,021 + -0.6 460,059 + +0.4 460,067 - -0.3 460,067 - -0.8 460,140 + +0.4 460,148 - Dsui_0455 0.16 -0.5 460,226 - Dsui_0455 0.26 -0.5 460,241 - Dsui_0455 0.28 -0.8 460,435 + +0.4 460,439 - Dsui_0455 0.54 -1.6 460,449 - Dsui_0455 0.55 -0.7 460,609 - Dsui_0455 0.77 -1.8 460,611 + +0.4 460,619 - Dsui_0455 0.78 -0.2 460,645 - Dsui_0455 0.81 -0.3 460,650 + -1.1 460,926 - -0.0 461,120 - Dsui_0456 0.26 -0.5 461,139 - Dsui_0456 0.28 -0.0 461,226 + Dsui_0456 0.37 -1.6 461,257 - Dsui_0456 0.40 -0.1 461,276 + Dsui_0456 0.42 -2.4 461,290 - Dsui_0456 0.44 -0.1 461,444 + Dsui_0456 0.60 +0.4 461,452 - Dsui_0456 0.61 -0.0 461,456 + Dsui_0456 0.61 +0.4 461,551 + Dsui_0456 0.72 -0.6 461,655 + Dsui_0456 0.83 +0.4
Or see this region's nucleotide sequence