Strain Fitness in Dechlorosoma suillum PS around Dsui_0417

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0415 and Dsui_0416 overlap by 1 nucleotidesDsui_0416 and Dsui_0417 are separated by 17 nucleotidesDsui_0417 and Dsui_0418 are separated by 34 nucleotides Dsui_0415: Dsui_0415 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 416,205 to 417,185 _0415 Dsui_0416: Dsui_0416 - transcriptional regulator, at 417,185 to 417,922 _0416 Dsui_0417: Dsui_0417 - gamma-glutamyltransferase, at 417,940 to 419,529 _0417 Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538 _0418 Position (kb) 417 418 419 420Strain fitness (log2 ratio) -2 -1 0 1at 416.956 kb on + strandat 416.956 kb on - strandat 417.146 kb on - strandat 417.331 kb on - strandat 417.362 kb on + strandat 417.369 kb on + strand, within Dsui_0416at 417.428 kb on - strandat 417.645 kb on + strandat 417.744 kb on + strandat 417.865 kb on - strandat 417.913 kb on + strandat 417.999 kb on + strandat 418.002 kb on - strandat 418.087 kb on - strandat 418.558 kb on - strand, within Dsui_0417at 418.844 kb on + strandat 418.919 kb on + strand, within Dsui_0417at 419.045 kb on + strandat 419.123 kb on + strand, within Dsui_0417at 419.131 kb on - strandat 419.131 kb on - strandat 419.172 kb on - strand, within Dsui_0417at 419.324 kb on + strand, within Dsui_0417at 419.327 kb on - strandat 419.489 kb on + strandat 419.533 kb on - strandat 419.593 kb on + strandat 419.782 kb on - strand, within Dsui_0418at 419.824 kb on - strandat 419.868 kb on + strand, within Dsui_0418at 419.922 kb on + strandat 419.935 kb on - strand, within Dsui_0418at 419.966 kb on - strand, within Dsui_0418at 419.997 kb on - strand, within Dsui_0418at 420.004 kb on - strand, within Dsui_0418at 420.017 kb on - strandat 420.083 kb on - strand, within Dsui_0418at 420.098 kb on + strand, within Dsui_0418at 420.195 kb on - strand, within Dsui_0418at 420.195 kb on - strandat 420.222 kb on + strandat 420.270 kb on + strand, within Dsui_0418at 420.278 kb on - strand, within Dsui_0418at 420.283 kb on - strand, within Dsui_0418at 420.508 kb on - strandat 420.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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416,956 + +0.5
416,956 - +0.5
417,146 - +0.5
417,331 - -1.1
417,362 + +0.5
417,369 + Dsui_0416 0.25 -2.7
417,428 - -0.5
417,645 + -1.5
417,744 + -0.5
417,865 - -1.1
417,913 + -1.5
417,999 + -1.8
418,002 - -0.5
418,087 - +0.5
418,558 - Dsui_0417 0.39 -1.5
418,844 + -0.5
418,919 + Dsui_0417 0.62 -2.3
419,045 + -0.5
419,123 + Dsui_0417 0.74 -2.3
419,131 - +0.5
419,131 - +0.5
419,172 - Dsui_0417 0.77 -1.5
419,324 + Dsui_0417 0.87 -1.5
419,327 - -0.5
419,489 + -1.1
419,533 - +0.5
419,593 + +0.5
419,782 - Dsui_0418 0.22 +0.5
419,824 - -0.5
419,868 + Dsui_0418 0.31 -1.1
419,922 + +0.5
419,935 - Dsui_0418 0.38 +0.5
419,966 - Dsui_0418 0.41 -1.8
419,997 - Dsui_0418 0.44 -0.5
420,004 - Dsui_0418 0.45 -2.1
420,017 - -0.5
420,083 - Dsui_0418 0.53 -0.5
420,098 + Dsui_0418 0.55 -0.5
420,195 - Dsui_0418 0.65 -0.5
420,195 - +0.5
420,222 + -1.1
420,270 + Dsui_0418 0.72 -1.1
420,278 - Dsui_0418 0.73 -0.5
420,283 - Dsui_0418 0.74 -1.1
420,508 - -0.5
420,516 + -1.5

Or see this region's nucleotide sequence