Strain Fitness in Dechlorosoma suillum PS around Dsui_0186

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0183 and Dsui_0184 are separated by 187 nucleotidesDsui_0184 and Dsui_0185 are separated by 30 nucleotidesDsui_0185 and Dsui_0186 are separated by 23 nucleotidesDsui_0186 and Dsui_0187 are separated by 16 nucleotidesDsui_0187 and Dsui_0188 are separated by 28 nucleotides Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930 _0183 Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351 _0184 Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846 _0185 Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398 _0186 Dsui_0187: Dsui_0187 - hypothetical protein, at 188,415 to 189,269 _0187 Dsui_0188: Dsui_0188 - hypothetical protein, at 189,298 to 189,816 _0188 Position (kb) 185 186 187 188 189Strain fitness (log2 ratio) -2 -1 0 1at 185.099 kb on - strandat 185.108 kb on - strandat 185.161 kb on - strand, within Dsui_0184at 185.270 kb on - strand, within Dsui_0184at 185.397 kb on + strandat 185.510 kb on - strand, within Dsui_0185at 185.554 kb on - strand, within Dsui_0185at 185.592 kb on - strand, within Dsui_0185at 185.665 kb on + strand, within Dsui_0185at 185.776 kb on + strand, within Dsui_0185at 185.843 kb on - strandat 185.843 kb on - strandat 185.843 kb on - strandat 185.848 kb on - strandat 185.885 kb on - strandat 185.898 kb on - strandat 185.907 kb on + strandat 185.907 kb on + strandat 186.096 kb on - strandat 186.107 kb on + strandat 186.107 kb on + strandat 186.115 kb on - strandat 186.120 kb on - strandat 186.243 kb on + strand, within Dsui_0186at 186.325 kb on - strand, within Dsui_0186at 186.325 kb on - strand, within Dsui_0186at 186.325 kb on - strand, within Dsui_0186at 186.410 kb on + strand, within Dsui_0186at 186.485 kb on + strand, within Dsui_0186at 186.485 kb on + strand, within Dsui_0186at 186.630 kb on + strand, within Dsui_0186at 186.713 kb on + strand, within Dsui_0186at 186.713 kb on + strand, within Dsui_0186at 186.828 kb on + strand, within Dsui_0186at 186.874 kb on + strand, within Dsui_0186at 186.882 kb on - strand, within Dsui_0186at 187.050 kb on - strand, within Dsui_0186at 187.080 kb on - strand, within Dsui_0186at 187.090 kb on + strand, within Dsui_0186at 187.103 kb on + strand, within Dsui_0186at 187.111 kb on - strand, within Dsui_0186at 187.138 kb on + strand, within Dsui_0186at 187.138 kb on + strand, within Dsui_0186at 187.146 kb on - strand, within Dsui_0186at 187.165 kb on - strand, within Dsui_0186at 187.249 kb on + strand, within Dsui_0186at 187.368 kb on - strand, within Dsui_0186at 187.462 kb on + strand, within Dsui_0186at 187.506 kb on - strand, within Dsui_0186at 187.507 kb on + strand, within Dsui_0186at 187.610 kb on + strand, within Dsui_0186at 187.710 kb on + strand, within Dsui_0186at 187.710 kb on + strand, within Dsui_0186at 187.752 kb on - strand, within Dsui_0186at 187.757 kb on + strand, within Dsui_0186at 187.760 kb on - strand, within Dsui_0186at 187.780 kb on + strand, within Dsui_0186at 187.788 kb on - strand, within Dsui_0186at 188.024 kb on - strand, within Dsui_0186at 188.047 kb on - strand, within Dsui_0186at 188.149 kb on - strandat 188.294 kb on + strandat 188.391 kb on - strandat 188.410 kb on - strandat 188.421 kb on - strandat 188.463 kb on + strandat 188.463 kb on + strandat 188.481 kb on - strandat 188.673 kb on + strand, within Dsui_0187at 188.707 kb on - strand, within Dsui_0187at 188.731 kb on - strand, within Dsui_0187at 188.859 kb on - strand, within Dsui_0187at 188.936 kb on - strand, within Dsui_0187at 188.978 kb on - strand, within Dsui_0187at 188.986 kb on + strand, within Dsui_0187at 189.032 kb on - strand, within Dsui_0187at 189.071 kb on + strand, within Dsui_0187at 189.114 kb on + strand, within Dsui_0187at 189.138 kb on - strand, within Dsui_0187at 189.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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185,099 - -1.6
185,108 - -0.6
185,161 - Dsui_0184 0.18 +0.4
185,270 - Dsui_0184 0.65 -0.6
185,397 + +0.4
185,510 - Dsui_0185 0.28 +0.4
185,554 - Dsui_0185 0.37 -1.6
185,592 - Dsui_0185 0.45 -0.6
185,665 + Dsui_0185 0.61 -0.6
185,776 + Dsui_0185 0.85 +0.4
185,843 - +0.4
185,843 - -1.2
185,843 - +0.4
185,848 - -1.2
185,885 - +0.4
185,898 - +0.4
185,907 + +0.4
185,907 + -1.6
186,096 - -0.6
186,107 + +0.4
186,107 + +0.4
186,115 - -1.2
186,120 - +0.4
186,243 + Dsui_0186 0.15 -0.6
186,325 - Dsui_0186 0.18 +0.4
186,325 - Dsui_0186 0.18 -1.2
186,325 - Dsui_0186 0.18 -1.2
186,410 + Dsui_0186 0.21 +0.4
186,485 + Dsui_0186 0.24 +0.4
186,485 + Dsui_0186 0.24 -2.4
186,630 + Dsui_0186 0.30 +0.4
186,713 + Dsui_0186 0.33 -1.6
186,713 + Dsui_0186 0.33 -0.6
186,828 + Dsui_0186 0.38 -0.6
186,874 + Dsui_0186 0.40 -0.6
186,882 - Dsui_0186 0.40 -1.2
187,050 - Dsui_0186 0.47 -0.6
187,080 - Dsui_0186 0.48 +0.4
187,090 + Dsui_0186 0.48 +0.4
187,103 + Dsui_0186 0.49 -2.2
187,111 - Dsui_0186 0.49 +0.4
187,138 + Dsui_0186 0.50 +0.4
187,138 + Dsui_0186 0.50 +1.4
187,146 - Dsui_0186 0.50 -1.6
187,165 - Dsui_0186 0.51 +0.4
187,249 + Dsui_0186 0.55 -1.9
187,368 - Dsui_0186 0.59 +0.4
187,462 + Dsui_0186 0.63 -0.6
187,506 - Dsui_0186 0.65 +0.4
187,507 + Dsui_0186 0.65 -0.6
187,610 + Dsui_0186 0.69 +0.4
187,710 + Dsui_0186 0.73 -0.6
187,710 + Dsui_0186 0.73 +0.4
187,752 - Dsui_0186 0.74 -1.2
187,757 + Dsui_0186 0.75 +0.4
187,760 - Dsui_0186 0.75 -1.2
187,780 + Dsui_0186 0.76 -0.6
187,788 - Dsui_0186 0.76 +0.4
188,024 - Dsui_0186 0.85 +0.4
188,047 - Dsui_0186 0.86 -0.6
188,149 - -0.6
188,294 + +0.4
188,391 - -0.6
188,410 - -0.6
188,421 - -0.6
188,463 + +0.4
188,463 + +0.4
188,481 - +0.4
188,673 + Dsui_0187 0.30 -1.9
188,707 - Dsui_0187 0.34 +0.4
188,731 - Dsui_0187 0.37 +0.4
188,859 - Dsui_0187 0.52 -0.6
188,936 - Dsui_0187 0.61 -0.6
188,978 - Dsui_0187 0.66 -1.2
188,986 + Dsui_0187 0.67 -1.2
189,032 - Dsui_0187 0.72 +0.4
189,071 + Dsui_0187 0.77 +0.4
189,114 + Dsui_0187 0.82 -1.6
189,138 - Dsui_0187 0.85 -1.2
189,316 + +0.4

Or see this region's nucleotide sequence