Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0108 and Dsui_0109 are separated by 135 nucleotides Dsui_0109 and Dsui_0110 overlap by 4 nucleotides Dsui_0110 and Dsui_0111 are separated by 182 nucleotides
Dsui_0108: Dsui_0108 - hypothetical protein, at 107,013 to 107,132
_0108
Dsui_0109: Dsui_0109 - response regulator of the LytR/AlgR family, at 107,268 to 108,053
_0109
Dsui_0110: Dsui_0110 - Histidine kinase, at 108,050 to 109,006
_0110
Dsui_0111: Dsui_0111 - argininosuccinate lyase, at 109,189 to 110,574
_0111
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 107.068 kb on - strand at 107.096 kb on + strand, within Dsui_0108 at 107.146 kb on + strand at 107.146 kb on + strand at 107.154 kb on - strand at 107.154 kb on - strand at 107.159 kb on + strand at 107.177 kb on + strand at 107.177 kb on + strand at 107.194 kb on - strand at 107.256 kb on + strand at 107.264 kb on - strand at 107.332 kb on + strand at 107.332 kb on + strand at 107.340 kb on - strand at 107.340 kb on - strand at 107.342 kb on + strand at 107.395 kb on - strand, within Dsui_0109 at 107.433 kb on - strand, within Dsui_0109 at 107.472 kb on + strand, within Dsui_0109 at 107.504 kb on + strand at 107.581 kb on - strand at 107.648 kb on - strand, within Dsui_0109 at 107.648 kb on - strand, within Dsui_0109 at 107.658 kb on + strand, within Dsui_0109 at 107.700 kb on - strand, within Dsui_0109 at 107.703 kb on + strand, within Dsui_0109 at 107.724 kb on - strand, within Dsui_0109 at 107.759 kb on - strand, within Dsui_0109 at 107.831 kb on + strand at 107.862 kb on + strand, within Dsui_0109 at 107.985 kb on - strand at 107.985 kb on - strand at 108.040 kb on - strand at 108.065 kb on + strand at 108.068 kb on - strand at 108.078 kb on - strand at 108.165 kb on - strand, within Dsui_0110 at 108.172 kb on + strand at 108.202 kb on + strand at 108.235 kb on + strand at 108.385 kb on - strand, within Dsui_0110 at 108.387 kb on + strand at 108.387 kb on + strand at 108.445 kb on - strand, within Dsui_0110 at 108.461 kb on + strand, within Dsui_0110 at 108.480 kb on + strand, within Dsui_0110 at 108.488 kb on - strand, within Dsui_0110 at 108.488 kb on - strand at 108.515 kb on + strand, within Dsui_0110 at 108.518 kb on - strand at 108.575 kb on - strand, within Dsui_0110 at 108.586 kb on - strand, within Dsui_0110 at 108.658 kb on - strand, within Dsui_0110 at 108.672 kb on - strand, within Dsui_0110 at 108.726 kb on + strand, within Dsui_0110 at 108.783 kb on + strand, within Dsui_0110 at 108.787 kb on + strand at 108.848 kb on + strand, within Dsui_0110 at 108.894 kb on - strand, within Dsui_0110 at 108.953 kb on + strand at 109.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 107,068 - +0.4 107,096 + Dsui_0108 0.69 -1.6 107,146 + +0.4 107,146 + -1.9 107,154 - -1.6 107,154 - +0.4 107,159 + -1.9 107,177 + -0.6 107,177 + -1.2 107,194 - -2.6 107,256 + -1.6 107,264 - +0.4 107,332 + -0.6 107,332 + +0.4 107,340 - -0.6 107,340 - +0.4 107,342 + -1.9 107,395 - Dsui_0109 0.16 +0.4 107,433 - Dsui_0109 0.21 -0.6 107,472 + Dsui_0109 0.26 -2.9 107,504 + +0.4 107,581 - -1.2 107,648 - Dsui_0109 0.48 +1.4 107,648 - Dsui_0109 0.48 -1.2 107,658 + Dsui_0109 0.50 -1.2 107,700 - Dsui_0109 0.55 +0.4 107,703 + Dsui_0109 0.55 -1.6 107,724 - Dsui_0109 0.58 +0.4 107,759 - Dsui_0109 0.62 +1.4 107,831 + -1.2 107,862 + Dsui_0109 0.76 -1.6 107,985 - -1.0 107,985 - +0.4 108,040 - +0.4 108,065 + -2.6 108,068 - +0.4 108,078 - -2.2 108,165 - Dsui_0110 0.12 -1.6 108,172 + +0.4 108,202 + -0.6 108,235 + +0.4 108,385 - Dsui_0110 0.35 +0.4 108,387 + +0.4 108,387 + +0.4 108,445 - Dsui_0110 0.41 +0.4 108,461 + Dsui_0110 0.43 -1.6 108,480 + Dsui_0110 0.45 -1.2 108,488 - Dsui_0110 0.46 -1.6 108,488 - +0.4 108,515 + Dsui_0110 0.49 -2.4 108,518 - +0.4 108,575 - Dsui_0110 0.55 -1.2 108,586 - Dsui_0110 0.56 -1.6 108,658 - Dsui_0110 0.64 -0.6 108,672 - Dsui_0110 0.65 +0.4 108,726 + Dsui_0110 0.71 -2.2 108,783 + Dsui_0110 0.77 +0.4 108,787 + +0.4 108,848 + Dsui_0110 0.83 -1.2 108,894 - Dsui_0110 0.88 -0.6 108,953 + -1.2 109,034 + -2.6
Or see this region's nucleotide sequence