Strain Fitness in Dechlorosoma suillum PS around Dsui_0110

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0108 and Dsui_0109 are separated by 135 nucleotidesDsui_0109 and Dsui_0110 overlap by 4 nucleotidesDsui_0110 and Dsui_0111 are separated by 182 nucleotides Dsui_0108: Dsui_0108 - hypothetical protein, at 107,013 to 107,132 _0108 Dsui_0109: Dsui_0109 - response regulator of the LytR/AlgR family, at 107,268 to 108,053 _0109 Dsui_0110: Dsui_0110 - Histidine kinase, at 108,050 to 109,006 _0110 Dsui_0111: Dsui_0111 - argininosuccinate lyase, at 109,189 to 110,574 _0111 Position (kb) 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1at 107.068 kb on - strandat 107.096 kb on + strand, within Dsui_0108at 107.146 kb on + strandat 107.146 kb on + strandat 107.154 kb on - strandat 107.154 kb on - strandat 107.159 kb on + strandat 107.177 kb on + strandat 107.177 kb on + strandat 107.194 kb on - strandat 107.256 kb on + strandat 107.264 kb on - strandat 107.332 kb on + strandat 107.332 kb on + strandat 107.340 kb on - strandat 107.340 kb on - strandat 107.342 kb on + strandat 107.395 kb on - strand, within Dsui_0109at 107.433 kb on - strand, within Dsui_0109at 107.472 kb on + strand, within Dsui_0109at 107.504 kb on + strandat 107.581 kb on - strandat 107.648 kb on - strand, within Dsui_0109at 107.648 kb on - strand, within Dsui_0109at 107.658 kb on + strand, within Dsui_0109at 107.700 kb on - strand, within Dsui_0109at 107.703 kb on + strand, within Dsui_0109at 107.724 kb on - strand, within Dsui_0109at 107.759 kb on - strand, within Dsui_0109at 107.831 kb on + strandat 107.862 kb on + strand, within Dsui_0109at 107.985 kb on - strandat 107.985 kb on - strandat 108.040 kb on - strandat 108.065 kb on + strandat 108.068 kb on - strandat 108.078 kb on - strandat 108.165 kb on - strand, within Dsui_0110at 108.172 kb on + strandat 108.202 kb on + strandat 108.235 kb on + strandat 108.385 kb on - strand, within Dsui_0110at 108.387 kb on + strandat 108.387 kb on + strandat 108.445 kb on - strand, within Dsui_0110at 108.461 kb on + strand, within Dsui_0110at 108.480 kb on + strand, within Dsui_0110at 108.488 kb on - strand, within Dsui_0110at 108.488 kb on - strandat 108.515 kb on + strand, within Dsui_0110at 108.518 kb on - strandat 108.575 kb on - strand, within Dsui_0110at 108.586 kb on - strand, within Dsui_0110at 108.658 kb on - strand, within Dsui_0110at 108.672 kb on - strand, within Dsui_0110at 108.726 kb on + strand, within Dsui_0110at 108.783 kb on + strand, within Dsui_0110at 108.787 kb on + strandat 108.848 kb on + strand, within Dsui_0110at 108.894 kb on - strand, within Dsui_0110at 108.953 kb on + strandat 109.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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107,068 - +0.4
107,096 + Dsui_0108 0.69 -1.6
107,146 + +0.4
107,146 + -1.9
107,154 - -1.6
107,154 - +0.4
107,159 + -1.9
107,177 + -0.6
107,177 + -1.2
107,194 - -2.6
107,256 + -1.6
107,264 - +0.4
107,332 + -0.6
107,332 + +0.4
107,340 - -0.6
107,340 - +0.4
107,342 + -1.9
107,395 - Dsui_0109 0.16 +0.4
107,433 - Dsui_0109 0.21 -0.6
107,472 + Dsui_0109 0.26 -2.9
107,504 + +0.4
107,581 - -1.2
107,648 - Dsui_0109 0.48 +1.4
107,648 - Dsui_0109 0.48 -1.2
107,658 + Dsui_0109 0.50 -1.2
107,700 - Dsui_0109 0.55 +0.4
107,703 + Dsui_0109 0.55 -1.6
107,724 - Dsui_0109 0.58 +0.4
107,759 - Dsui_0109 0.62 +1.4
107,831 + -1.2
107,862 + Dsui_0109 0.76 -1.6
107,985 - -1.0
107,985 - +0.4
108,040 - +0.4
108,065 + -2.6
108,068 - +0.4
108,078 - -2.2
108,165 - Dsui_0110 0.12 -1.6
108,172 + +0.4
108,202 + -0.6
108,235 + +0.4
108,385 - Dsui_0110 0.35 +0.4
108,387 + +0.4
108,387 + +0.4
108,445 - Dsui_0110 0.41 +0.4
108,461 + Dsui_0110 0.43 -1.6
108,480 + Dsui_0110 0.45 -1.2
108,488 - Dsui_0110 0.46 -1.6
108,488 - +0.4
108,515 + Dsui_0110 0.49 -2.4
108,518 - +0.4
108,575 - Dsui_0110 0.55 -1.2
108,586 - Dsui_0110 0.56 -1.6
108,658 - Dsui_0110 0.64 -0.6
108,672 - Dsui_0110 0.65 +0.4
108,726 + Dsui_0110 0.71 -2.2
108,783 + Dsui_0110 0.77 +0.4
108,787 + +0.4
108,848 + Dsui_0110 0.83 -1.2
108,894 - Dsui_0110 0.88 -0.6
108,953 + -1.2
109,034 + -2.6

Or see this region's nucleotide sequence