Strain Fitness in Dechlorosoma suillum PS around Dsui_0011

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0010 and Dsui_0011 are separated by 417 nucleotidesDsui_0011 and Dsui_0012 are separated by 221 nucleotides Dsui_0010: Dsui_0010 - RraA family protein, at 8,436 to 8,927 _0010 Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655 _0011 Dsui_0012: Dsui_0012 - putative permease, DMT superfamily, at 10,877 to 11,764 _0012 Position (kb) 9 10 11Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 8.441 kb on - strandat 8.443 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.485 kb on + strandat 8.485 kb on + strandat 8.521 kb on - strand, within Dsui_0010at 8.533 kb on + strand, within Dsui_0010at 8.562 kb on - strand, within Dsui_0010at 8.601 kb on - strand, within Dsui_0010at 8.601 kb on - strand, within Dsui_0010at 8.606 kb on - strand, within Dsui_0010at 8.618 kb on + strand, within Dsui_0010at 8.626 kb on - strand, within Dsui_0010at 8.626 kb on - strand, within Dsui_0010at 8.764 kb on + strand, within Dsui_0010at 8.781 kb on + strand, within Dsui_0010at 8.894 kb on - strandat 8.991 kb on + strandat 9.010 kb on + strandat 9.070 kb on - strandat 9.089 kb on + strandat 9.103 kb on + strandat 9.279 kb on + strandat 9.279 kb on + strandat 9.281 kb on + strandat 9.287 kb on - strandat 9.291 kb on + strandat 9.291 kb on + strandat 9.352 kb on + strandat 9.360 kb on - strandat 9.383 kb on + strandat 9.457 kb on + strandat 9.478 kb on + strand, within Dsui_0011at 9.486 kb on - strand, within Dsui_0011at 9.501 kb on - strand, within Dsui_0011at 9.587 kb on + strand, within Dsui_0011at 9.587 kb on + strand, within Dsui_0011at 9.590 kb on - strand, within Dsui_0011at 9.629 kb on + strand, within Dsui_0011at 9.641 kb on + strand, within Dsui_0011at 9.677 kb on - strand, within Dsui_0011at 9.763 kb on + strand, within Dsui_0011at 9.771 kb on - strand, within Dsui_0011at 9.771 kb on - strand, within Dsui_0011at 9.850 kb on + strand, within Dsui_0011at 9.928 kb on + strand, within Dsui_0011at 9.965 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.035 kb on - strand, within Dsui_0011at 10.040 kb on - strand, within Dsui_0011at 10.057 kb on + strand, within Dsui_0011at 10.065 kb on - strand, within Dsui_0011at 10.150 kb on + strand, within Dsui_0011at 10.158 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.297 kb on - strand, within Dsui_0011at 10.371 kb on + strand, within Dsui_0011at 10.432 kb on + strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.467 kb on + strand, within Dsui_0011at 10.531 kb on - strandat 10.614 kb on - strandat 10.625 kb on - strandat 10.625 kb on - strandat 10.690 kb on - strandat 10.748 kb on - strandat 10.773 kb on + strandat 10.773 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.833 kb on - strandat 10.854 kb on + strandat 10.867 kb on + strandat 10.867 kb on + strandat 10.875 kb on - strandat 11.015 kb on - strand, within Dsui_0012at 11.021 kb on - strandat 11.045 kb on + strand, within Dsui_0012at 11.105 kb on - strand, within Dsui_0012at 11.110 kb on - strand, within Dsui_0012at 11.163 kb on - strand, within Dsui_0012at 11.255 kb on - strand, within Dsui_0012at 11.267 kb on - strand, within Dsui_0012at 11.274 kb on - strand, within Dsui_0012at 11.343 kb on + strand, within Dsui_0012at 11.408 kb on + strand, within Dsui_0012at 11.428 kb on - strand, within Dsui_0012at 11.434 kb on + strand, within Dsui_0012at 11.471 kb on + strand, within Dsui_0012at 11.524 kb on - strandat 11.536 kb on + strand, within Dsui_0012at 11.536 kb on + strand, within Dsui_0012at 11.547 kb on + strand, within Dsui_0012at 11.550 kb on - strand, within Dsui_0012at 11.598 kb on + strand, within Dsui_0012at 11.610 kb on - strandat 11.610 kb on - strand, within Dsui_0012

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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8,441 - -1.2
8,443 + -1.9
8,449 + -1.4
8,449 + +1.2
8,449 + -1.6
8,449 + -2.4
8,449 + +2.7
8,457 - +0.4
8,457 - +1.4
8,457 - +0.4
8,457 - -0.6
8,457 - -0.6
8,457 - -1.2
8,457 - -1.6
8,485 + -1.6
8,485 + +0.7
8,521 - Dsui_0010 0.17 -1.6
8,533 + Dsui_0010 0.20 -0.9
8,562 - Dsui_0010 0.26 -0.6
8,601 - Dsui_0010 0.34 -1.9
8,601 - Dsui_0010 0.34 +0.4
8,606 - Dsui_0010 0.35 -0.6
8,618 + Dsui_0010 0.37 -0.9
8,626 - Dsui_0010 0.39 -1.2
8,626 - Dsui_0010 0.39 +0.4
8,764 + Dsui_0010 0.67 +0.3
8,781 + Dsui_0010 0.70 -0.8
8,894 - +0.4
8,991 + -2.5
9,010 + +0.4
9,070 - +0.4
9,089 + -2.4
9,103 + -1.6
9,279 + +0.4
9,279 + +0.4
9,281 + -4.3
9,287 - -1.9
9,291 + -2.2
9,291 + -2.6
9,352 + +2.0
9,360 - -0.6
9,383 + +0.4
9,457 + -0.2
9,478 + Dsui_0011 0.10 -2.7
9,486 - Dsui_0011 0.11 +0.4
9,501 - Dsui_0011 0.12 -0.6
9,587 + Dsui_0011 0.18 -2.2
9,587 + Dsui_0011 0.18 -0.7
9,590 - Dsui_0011 0.19 +0.4
9,629 + Dsui_0011 0.22 -0.2
9,641 + Dsui_0011 0.23 -3.0
9,677 - Dsui_0011 0.25 -3.3
9,763 + Dsui_0011 0.32 -1.6
9,771 - Dsui_0011 0.32 +0.4
9,771 - Dsui_0011 0.32 -1.2
9,850 + Dsui_0011 0.39 -0.6
9,928 + Dsui_0011 0.44 +0.4
9,965 - Dsui_0011 0.47 -0.6
10,018 - Dsui_0011 0.51 -2.2
10,018 - Dsui_0011 0.51 -1.2
10,035 - Dsui_0011 0.53 +0.4
10,040 - Dsui_0011 0.53 -0.6
10,057 + Dsui_0011 0.54 -1.6
10,065 - Dsui_0011 0.55 -1.2
10,150 + Dsui_0011 0.61 +1.4
10,158 - Dsui_0011 0.62 -1.9
10,258 - Dsui_0011 0.70 -1.6
10,258 - Dsui_0011 0.70 +0.4
10,297 - Dsui_0011 0.73 +0.4
10,371 + Dsui_0011 0.78 -0.1
10,432 + Dsui_0011 0.83 +0.4
10,456 - Dsui_0011 0.85 -1.6
10,456 - Dsui_0011 0.85 -2.2
10,467 + Dsui_0011 0.86 -2.0
10,531 - -1.2
10,614 - -0.6
10,625 - -1.6
10,625 - +0.4
10,690 - +0.4
10,748 - +0.4
10,773 + -0.9
10,773 - +0.4
10,781 - -1.2
10,781 - +0.4
10,781 - +0.4
10,781 - +0.4
10,781 - +0.4
10,781 - +0.4
10,833 - -2.4
10,854 + -0.2
10,867 + +0.1
10,867 + -1.0
10,875 - -0.6
11,015 - Dsui_0012 0.16 -0.6
11,021 - +0.4
11,045 + Dsui_0012 0.19 -0.0
11,105 - Dsui_0012 0.26 -1.2
11,110 - Dsui_0012 0.26 -2.7
11,163 - Dsui_0012 0.32 -2.7
11,255 - Dsui_0012 0.43 -1.6
11,267 - Dsui_0012 0.44 +0.4
11,274 - Dsui_0012 0.45 +0.4
11,343 + Dsui_0012 0.52 -0.1
11,408 + Dsui_0012 0.60 +0.0
11,428 - Dsui_0012 0.62 -1.6
11,434 + Dsui_0012 0.63 -1.0
11,471 + Dsui_0012 0.67 -0.3
11,524 - -0.6
11,536 + Dsui_0012 0.74 +0.7
11,536 + Dsui_0012 0.74 -1.7
11,547 + Dsui_0012 0.75 -0.2
11,550 - Dsui_0012 0.76 -0.6
11,598 + Dsui_0012 0.81 -1.2
11,610 - -0.6
11,610 - Dsui_0012 0.83 +0.4

Or see this region's nucleotide sequence