Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03959

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01952 and CCNA_03959 are separated by 368 nucleotidesCCNA_03959 and CCNA_01954 overlap by 77 nucleotides CCNA_01952: CCNA_01952 - N-acetylmuramoyl-L-alanine amidase, at 2,095,782 to 2,096,969 _01952 CCNA_03959: CCNA_03959 - hypothetical protein, at 2,097,338 to 2,097,556 _03959 CCNA_01954: CCNA_01954 - ribonuclease E, at 2,097,480 to 2,100,176 _01954 Position (kb) 2097 2098Strain fitness (log2 ratio) -2 -1 0 1at 2096.420 kb on - strand, within CCNA_01952at 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.923 kb on + strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.931 kb on - strandat 2096.942 kb on - strandat 2096.942 kb on - strandat 2096.952 kb on + strandat 2096.965 kb on - strandat 2096.967 kb on - strandat 2097.012 kb on - strandat 2097.042 kb on - strandat 2097.097 kb on - strandat 2097.117 kb on + strandat 2097.125 kb on - strandat 2097.128 kb on + strandat 2097.186 kb on + strandat 2097.221 kb on + strandat 2097.322 kb on + strandat 2097.368 kb on + strandat 2097.420 kb on + strand, within CCNA_03959at 2097.451 kb on - strand, within CCNA_03959

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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2,096,420 - CCNA_01952 0.54 +1.5
2,096,923 + +0.2
2,096,923 + +0.9
2,096,923 + -1.7
2,096,923 + +0.5
2,096,931 - -0.3
2,096,931 - -1.2
2,096,931 - -1.8
2,096,931 - -0.3
2,096,931 - +0.1
2,096,931 - -0.6
2,096,931 - +0.5
2,096,931 - -0.3
2,096,931 - +0.4
2,096,931 - -0.7
2,096,942 - -0.6
2,096,942 - +0.0
2,096,952 + +1.5
2,096,965 - -2.0
2,096,967 - -1.2
2,097,012 - +0.1
2,097,042 - -1.7
2,097,097 - -1.1
2,097,117 + -0.9
2,097,125 - -0.9
2,097,128 + -0.6
2,097,186 + -0.3
2,097,221 + -1.0
2,097,322 + +0.5
2,097,368 + +1.1
2,097,420 + CCNA_03959 0.37 +1.1
2,097,451 - CCNA_03959 0.52 +0.4

Or see this region's nucleotide sequence