Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03799

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03798 and CCNA_03799 overlap by 4 nucleotidesCCNA_03799 and CCNA_03800 overlap by 88 nucleotidesCCNA_03800 and CCNA_03801 are separated by 14 nucleotides CCNA_03798: CCNA_03798 - tRNA 2-methylthioadenosine synthase-like protein, at 3,961,164 to 3,962,495 _03798 CCNA_03799: CCNA_03799 - short chain dehydrogenase, at 3,962,492 to 3,963,415 _03799 CCNA_03800: CCNA_03800 - diaminopimelate epimerase, at 3,963,328 to 3,964,194 _03800 CCNA_03801: CCNA_03801 - prolyl endopeptidase family, at 3,964,209 to 3,966,470 _03801 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -2 -1 0 1 2at 3962.470 kb on + strandat 3962.596 kb on - strand, within CCNA_03799at 3962.602 kb on - strand, within CCNA_03799at 3962.603 kb on - strand, within CCNA_03799at 3962.660 kb on - strand, within CCNA_03799at 3962.690 kb on - strand, within CCNA_03799at 3962.795 kb on - strand, within CCNA_03799at 3962.808 kb on + strand, within CCNA_03799at 3962.820 kb on + strand, within CCNA_03799at 3962.927 kb on - strand, within CCNA_03799at 3962.976 kb on + strand, within CCNA_03799at 3962.984 kb on - strand, within CCNA_03799at 3962.998 kb on - strand, within CCNA_03799at 3963.040 kb on - strand, within CCNA_03799at 3963.118 kb on - strand, within CCNA_03799at 3963.326 kb on - strandat 3963.363 kb on + strandat 3963.386 kb on - strandat 3964.189 kb on + strandat 3964.204 kb on + strandat 3964.207 kb on - strandat 3964.256 kb on - strandat 3964.271 kb on - strandat 3964.281 kb on + strandat 3964.281 kb on + strandat 3964.281 kb on + strandat 3964.289 kb on - strandat 3964.289 kb on - strandat 3964.291 kb on + strandat 3964.321 kb on + strandat 3964.332 kb on + strandat 3964.346 kb on - strandat 3964.371 kb on + strandat 3964.394 kb on - strandat 3964.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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3,962,470 + +0.7
3,962,596 - CCNA_03799 0.11 +1.7
3,962,602 - CCNA_03799 0.12 +1.0
3,962,603 - CCNA_03799 0.12 +1.3
3,962,660 - CCNA_03799 0.18 +0.5
3,962,690 - CCNA_03799 0.21 +0.4
3,962,795 - CCNA_03799 0.33 +1.8
3,962,808 + CCNA_03799 0.34 -0.7
3,962,820 + CCNA_03799 0.35 -0.9
3,962,927 - CCNA_03799 0.47 +0.7
3,962,976 + CCNA_03799 0.52 -0.2
3,962,984 - CCNA_03799 0.53 +1.0
3,962,998 - CCNA_03799 0.55 +0.1
3,963,040 - CCNA_03799 0.59 +0.6
3,963,118 - CCNA_03799 0.68 -0.2
3,963,326 - +2.5
3,963,363 + -0.7
3,963,386 - +0.9
3,964,189 + -0.7
3,964,204 + -0.8
3,964,207 - +0.2
3,964,256 - +0.5
3,964,271 - +1.1
3,964,281 + -2.2
3,964,281 + +0.4
3,964,281 + -0.2
3,964,289 - +1.3
3,964,289 - -0.7
3,964,291 + +2.1
3,964,321 + +0.9
3,964,332 + +0.2
3,964,346 - -1.1
3,964,371 + -1.1
3,964,394 - -1.2
3,964,394 - +0.3

Or see this region's nucleotide sequence