Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03293

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
3,459,753	-		CCNA_03292	0.44	-1.0
3,459,753	-		CCNA_03292	0.44	-0.4
3,459,754	-		CCNA_03292	0.44	-1.6
3,459,869	+		CCNA_03292	0.51	-0.9
3,459,872	-		CCNA_03292	0.51	-1.9
3,459,893	+		CCNA_03292	0.53	-1.3
3,459,893	+		CCNA_03292	0.53	-0.1
3,459,901	-		CCNA_03292	0.53	-0.6
3,459,901	-		CCNA_03292	0.53	-0.3
3,459,901	-		CCNA_03292	0.53	+0.6
3,459,901	-		CCNA_03292	0.53	-0.9
3,459,932	+		CCNA_03292	0.55	+0.6
3,459,948	+		CCNA_03292	0.56	+0.6
3,459,972	-		CCNA_03292	0.58	+0.2
3,459,985	+		CCNA_03292	0.59	+0.5
3,459,997	+		CCNA_03292	0.59	-0.4
3,459,997	+		CCNA_03292	0.59	-2.0
3,460,005	-		CCNA_03292	0.60	+0.2
3,460,005	-		CCNA_03292	0.60	-0.6
3,460,006	+		CCNA_03292	0.60	-1.1
3,460,014	-		CCNA_03292	0.60	-0.4
3,460,051	-		CCNA_03292	0.63	-2.0
3,460,056	-		CCNA_03292	0.63	+0.6
3,460,121	-		CCNA_03292	0.67	+0.6
3,460,121	-		CCNA_03292	0.67	-0.4
3,460,144	-		CCNA_03292	0.69	-1.7
3,460,155	-		CCNA_03292	0.69	+0.6
3,460,156	+		CCNA_03292	0.70	-0.4
3,460,254	+		CCNA_03292	0.76	+0.8
3,460,270	+		CCNA_03292	0.77	-0.3
3,460,324	-		CCNA_03292	0.80	-0.3
3,460,372	+		CCNA_03292	0.83	-0.5
3,460,384	+		CCNA_03292	0.84	+0.2
3,460,384	+		CCNA_03292	0.84	+0.1
3,460,384	+		CCNA_03292	0.84	+1.2
3,460,384	+		CCNA_03292	0.84	-1.4
3,460,392	-		CCNA_03292	0.85	-2.4
3,460,406	+		CCNA_03292	0.86	-0.1
3,460,410	+		CCNA_03292	0.86	+0.9
3,460,420	+		CCNA_03292	0.87	-0.3
3,460,435	-		CCNA_03292	0.88	-0.4
3,460,448	-		CCNA_03292	0.88	-0.9
3,460,453	-		CCNA_03292	0.89	+0.1
3,460,466	-		CCNA_03292	0.90	+0.3
3,460,486	+				+0.2
3,460,538	+				+1.3
3,460,623	+				+0.6
3,460,625	-				-2.3
3,460,631	-				-0.1
3,460,631	-				-1.0
3,460,776	+				-1.4
3,460,776	+				+0.6
3,460,777	+				+2.2
3,460,777	+				-1.6
3,460,784	-				+0.8
3,460,800	+				-0.2
3,460,820	+				+2.2
3,460,844	-				-0.0
3,460,849	-				+0.4
3,460,851	+				+0.2
3,460,851	+				+0.6
3,460,851	+				-0.1
3,460,859	-				-0.2
3,460,859	-				-2.6
3,460,879	-				+0.8
3,460,889	-				-1.2
3,460,893	+				+2.2
3,460,961	+		CCNA_03293	0.11	-0.8
3,460,975	+		CCNA_03293	0.12	-0.4
3,460,983	-		CCNA_03293	0.13	+0.9
3,460,983	-		CCNA_03293	0.13	+0.4
3,460,983	-		CCNA_03293	0.13	-0.1
3,460,997	+		CCNA_03293	0.13	-1.6
3,460,997	+		CCNA_03293	0.13	-1.7
3,461,023	+		CCNA_03293	0.14	+1.2
3,461,059	-		CCNA_03293	0.16	-1.1
3,461,064	-		CCNA_03293	0.16	+0.2
3,461,077	+		CCNA_03293	0.17	-1.4
3,461,084	-		CCNA_03293	0.17	+0.1
3,461,084	-		CCNA_03293	0.17	-0.9
3,461,090	+		CCNA_03293	0.18	-0.6
3,461,155	+		CCNA_03293	0.21	-0.7
3,461,166	+		CCNA_03293	0.21	-2.6
3,461,166	+		CCNA_03293	0.21	-0.4
3,461,172	-		CCNA_03293	0.22	+0.5
3,461,177	+		CCNA_03293	0.22	+0.5
3,461,180	-		CCNA_03293	0.22	-0.7
3,461,185	-		CCNA_03293	0.22	-0.7
3,461,185	-		CCNA_03293	0.22	-0.7
3,461,252	+		CCNA_03293	0.25	+0.6
3,461,252	+		CCNA_03293	0.25	-0.4
3,461,253	-		CCNA_03293	0.25	-1.4
3,461,260	-		CCNA_03293	0.26	-0.7
3,461,274	+		CCNA_03293	0.26	+0.3
3,461,311	-		CCNA_03293	0.28	+1.0
3,461,322	+		CCNA_03293	0.29	-1.0
3,461,330	-		CCNA_03293	0.29	+0.5
3,461,330	-		CCNA_03293	0.29	-2.9
3,461,350	+		CCNA_03293	0.30	+1.2
3,461,391	+		CCNA_03293	0.32	+0.0
3,461,391	+		CCNA_03293	0.32	-1.1
3,461,391	+		CCNA_03293	0.32	-0.7
3,461,391	+		CCNA_03293	0.32	-0.3
3,461,391	+		CCNA_03293	0.32	-0.6
3,461,399	-		CCNA_03293	0.32	+0.0
3,461,399	-		CCNA_03293	0.32	+0.0
3,461,399	-		CCNA_03293	0.32	-0.3
3,461,399	-		CCNA_03293	0.32	-1.0
3,461,399	-		CCNA_03293	0.32	+0.1
3,461,399	-		CCNA_03293	0.32	+0.6
3,461,401	+		CCNA_03293	0.33	-0.8
3,461,409	-		CCNA_03293	0.33	+2.2
3,461,409	-		CCNA_03293	0.33	-0.1
3,461,450	-		CCNA_03293	0.35	-1.8
3,461,517	-		CCNA_03293	0.38	-1.1
3,461,542	+		CCNA_03293	0.39	-0.0
3,461,547	+		CCNA_03293	0.40	-1.1
3,461,572	-		CCNA_03293	0.41	+1.0
3,461,582	-		CCNA_03293	0.41	+2.2
3,461,589	+		CCNA_03293	0.42	+0.3
3,461,599	+		CCNA_03293	0.42	-0.8
3,461,632	+		CCNA_03293	0.44	-0.4
3,461,728	+		CCNA_03293	0.48	-0.4
3,461,743	+		CCNA_03293	0.49	-0.4
3,461,816	-		CCNA_03293	0.52	+1.0
3,461,931	+		CCNA_03293	0.58	+0.8
3,461,954	-		CCNA_03293	0.59	-1.1
3,461,966	-		CCNA_03293	0.60	-0.1
3,461,975	-		CCNA_03293	0.60	-2.2
3,461,975	-		CCNA_03293	0.60	+0.6
3,461,980	-		CCNA_03293	0.60	-1.9
3,462,027	+				-0.4
3,462,027	+		CCNA_03293	0.62	+0.6
3,462,027	+		CCNA_03293	0.62	+0.6
3,462,029	+		CCNA_03293	0.63	+1.2
3,462,029	+		CCNA_03293	0.63	+0.6
3,462,029	+		CCNA_03293	0.63	+0.6
3,462,037	-		CCNA_03293	0.63	-1.8
3,462,043	-		CCNA_03293	0.63	+0.5
3,462,061	-		CCNA_03293	0.64	-0.7
3,462,071	-		CCNA_03293	0.65	+2.2
3,462,086	-		CCNA_03293	0.65	-0.8
3,462,102	-		CCNA_03293	0.66	-1.9
3,462,143	+		CCNA_03293	0.68	-1.1
3,462,143	+		CCNA_03293	0.68	-1.1
3,462,152	-		CCNA_03293	0.68	+0.6
3,462,164	+		CCNA_03293	0.69	-2.4
3,462,165	+		CCNA_03293	0.69	-0.6
3,462,173	-		CCNA_03293	0.69	-1.9
3,462,246	+		CCNA_03293	0.73	-1.1
3,462,255	+		CCNA_03293	0.73	-0.6
3,462,255	+		CCNA_03293	0.73	-0.4
3,462,265	+		CCNA_03293	0.74	+0.9
3,462,277	+		CCNA_03293	0.74	-0.7
3,462,286	+		CCNA_03293	0.75	+0.8
3,462,286	+		CCNA_03293	0.75	-1.2
3,462,286	+		CCNA_03293	0.75	-1.0
3,462,286	+		CCNA_03293	0.75	-0.9
3,462,286	+		CCNA_03293	0.75	-0.7
3,462,288	+		CCNA_03293	0.75	+1.1
3,462,294	-		CCNA_03293	0.75	+1.2
3,462,294	-		CCNA_03293	0.75	+0.0
3,462,294	-		CCNA_03293	0.75	-2.0
3,462,296	-		CCNA_03293	0.75	-0.5
3,462,303	+		CCNA_03293	0.76	-1.0
3,462,316	-		CCNA_03293	0.76	-0.8
3,462,320	-		CCNA_03293	0.76	+0.8
3,462,320	-		CCNA_03293	0.76	+0.4
3,462,363	+		CCNA_03293	0.79	+0.6
3,462,382	-		CCNA_03293	0.79	-0.2
3,462,393	-		CCNA_03293	0.80	+0.8
3,462,429	+		CCNA_03293	0.82	+0.1
3,462,437	-		CCNA_03293	0.82	-1.3
3,462,488	+		CCNA_03293	0.85	-0.8
3,462,488	+		CCNA_03293	0.85	-0.2
3,462,488	+		CCNA_03293	0.85	-1.2
3,462,488	+		CCNA_03293	0.85	+0.0
3,462,488	+		CCNA_03293	0.85	-0.1
3,462,488	+		CCNA_03293	0.85	+0.9
3,462,496	-		CCNA_03293	0.85	-0.8
3,462,496	-		CCNA_03293	0.85	+0.3
3,462,496	-		CCNA_03293	0.85	-0.8
3,462,496	-		CCNA_03293	0.85	-0.7
3,462,496	-		CCNA_03293	0.85	+0.0
3,462,562	+		CCNA_03293	0.88	-0.8
3,462,562	+		CCNA_03293	0.88	-1.9
3,462,572	+		CCNA_03293	0.89	+1.4
3,462,573	+		CCNA_03293	0.89	-0.6
3,462,573	+		CCNA_03293	0.89	-1.0
3,462,581	-		CCNA_03293	0.89	-0.7
3,462,581	-		CCNA_03293	0.89	+0.4
3,462,581	-		CCNA_03293	0.89	+0.2
3,462,581	-		CCNA_03293	0.89	-0.7
3,462,627	+				+1.0
3,462,632	+				+1.2
3,462,632	+				-0.1
3,462,674	+				-0.1
3,462,686	+				-1.8
3,462,686	+				-0.9
3,462,694	-				-1.6
3,462,694	-				+0.2
3,462,694	-				-1.4
3,462,694	-				-2.0
3,462,694	-				+0.2
3,462,694	-				-1.3
3,462,694	-				-1.6
3,462,694	-				-2.7
3,462,703	-				-0.5
3,462,713	-				-0.3
3,462,796	-				-0.8
3,462,838	+				-1.9
3,462,870	+				-1.7
3,462,870	+				+3.2
3,462,870	+				-0.0
3,462,878	-				-0.6
3,462,878	-				-0.5
3,462,906	+				-0.3
3,462,958	+				-0.5
3,463,092	+				-0.1
3,463,116	+				-0.3
3,463,165	+				-0.1
3,463,173	-				-1.6
3,463,173	-				-1.4
3,463,173	-				+0.3
3,463,226	-				+0.1
3,463,240	-				-1.6
3,463,241	+				+0.2
3,463,241	+				-0.4
3,463,245	-				+1.0
3,463,254	-				-0.3
3,463,273	-				+0.9
3,463,273	-				+0.2
3,463,273	-				-0.0
3,463,286	+				+1.2
3,463,337	+				-1.5
3,463,342	+				-1.0
3,463,342	+				+0.6
3,463,362	-		CCNA_03294	0.11	+0.4
3,463,369	+		CCNA_03294	0.12	+1.8
3,463,369	+		CCNA_03294	0.12	+0.6
3,463,370	+		CCNA_03294	0.12	-0.8
3,463,377	-		CCNA_03294	0.13	-0.1
3,463,377	-		CCNA_03294	0.13	+1.7
3,463,382	+		CCNA_03294	0.13	+2.2
3,463,388	-		CCNA_03294	0.14	+1.3
3,463,390	+		CCNA_03294	0.14	-0.1
3,463,400	-		CCNA_03294	0.15	+0.4
3,463,407	-		CCNA_03294	0.15	-0.5
3,463,415	+		CCNA_03294	0.16	-0.4
3,463,429	+		CCNA_03294	0.17	-0.1
3,463,436	-		CCNA_03294	0.18	-0.2
3,463,439	+		CCNA_03294	0.18	+0.6
3,463,442	-		CCNA_03294	0.18	-0.4
3,463,442	-		CCNA_03294	0.18	-0.1
3,463,442	-		CCNA_03294	0.18	+0.0
3,463,442	-		CCNA_03294	0.18	-0.3
3,463,447	-		CCNA_03294	0.18	-0.3
3,463,447	-		CCNA_03294	0.18	-0.5
3,463,447	-		CCNA_03294	0.18	+0.1
3,463,497	-		CCNA_03294	0.22	-1.9
3,463,499	+		CCNA_03294	0.23	-0.4
3,463,507	-		CCNA_03294	0.23	+0.5
3,463,510	+		CCNA_03294	0.24	+0.6
3,463,543	-		CCNA_03294	0.26	+0.8
3,463,544	+		CCNA_03294	0.26	-1.2
3,463,544	+		CCNA_03294	0.26	+0.9
3,463,552	-		CCNA_03294	0.27	-0.7
3,463,552	-		CCNA_03294	0.27	-0.2
3,463,552	-		CCNA_03294	0.27	-0.1
3,463,552	-		CCNA_03294	0.27	-1.0
3,463,552	-		CCNA_03294	0.27	-2.3
3,463,554	+		CCNA_03294	0.27	+0.2
3,463,557	-		CCNA_03294	0.27	+0.6
3,463,557	-		CCNA_03294	0.27	-0.8
3,463,562	-		CCNA_03294	0.28	+0.3
3,463,569	+		CCNA_03294	0.28	-0.8
3,463,577	-		CCNA_03294	0.29	+0.8
3,463,592	-		CCNA_03294	0.30	+1.2
3,463,661	+		CCNA_03294	0.36	-0.4
3,463,668	-		CCNA_03294	0.36	-1.5
3,463,678	-		CCNA_03294	0.37	-0.0
3,463,678	-		CCNA_03294	0.37	+0.5
3,463,678	-		CCNA_03294	0.37	-1.4
3,463,713	-		CCNA_03294	0.40	-0.4
3,463,718	+		CCNA_03294	0.41	-0.4
3,463,776	+		CCNA_03294	0.45	-0.1
3,463,796	+		CCNA_03294	0.47	+0.6