Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03236

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
3,400,142	+		CCNA_03235	0.28	+0.4
3,400,182	-		CCNA_03235	0.32	+1.2
3,400,206	+		CCNA_03235	0.34	-0.4
3,400,227	+		CCNA_03235	0.36	+2.2
3,400,263	+		CCNA_03235	0.39	+1.3
3,400,264	+		CCNA_03235	0.39	+1.2
3,400,294	+		CCNA_03235	0.42	+1.7
3,400,310	-		CCNA_03235	0.43	+3.8
3,400,315	-		CCNA_03235	0.43	-0.8
3,400,315	-		CCNA_03235	0.43	+0.9
3,400,328	+		CCNA_03235	0.45	+0.3
3,400,342	-		CCNA_03235	0.46	+2.0
3,400,349	-		CCNA_03235	0.46	+0.8
3,400,349	-		CCNA_03235	0.46	+0.9
3,400,359	-		CCNA_03235	0.47	+1.4
3,400,374	-		CCNA_03235	0.49	+0.8
3,400,380	-		CCNA_03235	0.49	+3.8
3,400,398	+		CCNA_03235	0.51	+2.0
3,400,398	+		CCNA_03235	0.51	+2.5
3,400,398	+		CCNA_03235	0.51	+2.8
3,400,398	+		CCNA_03235	0.51	+0.5
3,400,398	+		CCNA_03235	0.51	+0.8
3,400,400	+		CCNA_03235	0.51	+0.7
3,400,406	-		CCNA_03235	0.51	+1.5
3,400,406	-		CCNA_03235	0.51	+0.9
3,400,406	-		CCNA_03235	0.51	+0.9
3,400,406	-		CCNA_03235	0.51	+1.3
3,400,406	-		CCNA_03235	0.51	+1.0
3,400,406	-		CCNA_03235	0.51	+1.9
3,400,406	-		CCNA_03235	0.51	+1.7
3,400,410	+		CCNA_03235	0.52	+2.8
3,400,437	-		CCNA_03235	0.54	+1.9
3,400,457	+		CCNA_03235	0.56	+1.1
3,400,458	+		CCNA_03235	0.56	+1.6
3,400,468	+		CCNA_03235	0.57	+1.8
3,400,487	-		CCNA_03235	0.58	+0.1
3,400,487	-		CCNA_03235	0.58	+1.1
3,400,489	+		CCNA_03235	0.59	+2.1
3,400,489	+		CCNA_03235	0.59	+2.4
3,400,532	-		CCNA_03235	0.62	+1.9
3,400,534	+		CCNA_03235	0.62	+0.4
3,400,539	+		CCNA_03235	0.63	+1.4
3,400,539	+		CCNA_03235	0.63	+1.8
3,400,539	+		CCNA_03235	0.63	+1.8
3,400,542	-		CCNA_03235	0.63	+0.9
3,400,547	-		CCNA_03235	0.64	+0.2
3,400,547	-		CCNA_03235	0.64	+1.4
3,400,574	+		CCNA_03235	0.66	+2.2
3,400,580	-		CCNA_03235	0.66	+1.5
3,400,608	+		CCNA_03235	0.69	+0.8
3,400,616	-		CCNA_03235	0.70	+1.4
3,400,616	-		CCNA_03235	0.70	+1.5
3,400,659	+		CCNA_03235	0.73	+1.0
3,400,675	+		CCNA_03235	0.75	+2.2
3,400,677	+		CCNA_03235	0.75	+1.7
3,400,683	-		CCNA_03235	0.75	+0.3
3,400,683	-		CCNA_03235	0.75	+0.4
3,400,693	-		CCNA_03235	0.76	+1.8
3,400,720	+		CCNA_03235	0.79	+1.4
3,400,733	+		CCNA_03235	0.80	+0.6
3,400,736	-		CCNA_03235	0.80	+1.5
3,400,756	+		CCNA_03235	0.82	-0.1
3,400,821	+		CCNA_03235	0.88	+2.2
3,400,829	-		CCNA_03235	0.88	+1.0
3,400,868	+				-0.6
3,400,876	-				+1.8
3,400,909	+				+0.8
3,400,967	+				+0.2
3,400,975	+				+0.5
3,401,037	+				-0.5
3,401,037	+				+1.0
3,401,039	+				+0.4
3,401,060	+				-0.1
3,401,105	-				-0.4
3,401,128	-				+0.1
3,401,198	-		CCNA_03236	0.10	+1.2
3,401,199	+		CCNA_03236	0.10	+1.2
3,401,218	+		CCNA_03236	0.12	-0.4
3,401,225	+		CCNA_03236	0.13	+2.6
3,401,257	-		CCNA_03236	0.17	+1.2
3,401,275	+		CCNA_03236	0.19	+1.6
3,401,275	-		CCNA_03236	0.19	+0.5
3,401,282	-		CCNA_03236	0.20	-0.1
3,401,283	+		CCNA_03236	0.20	-0.6
3,401,283	+		CCNA_03236	0.20	+1.0
3,401,283	+		CCNA_03236	0.20	+2.2
3,401,283	-		CCNA_03236	0.20	+2.9
3,401,291	-		CCNA_03236	0.21	+1.4
3,401,291	-		CCNA_03236	0.21	+0.3
3,401,291	-		CCNA_03236	0.21	+0.4
3,401,296	-		CCNA_03236	0.21	+2.5
3,401,312	-		CCNA_03236	0.23	+0.4
3,401,332	-		CCNA_03236	0.25	+1.4
3,401,337	+		CCNA_03236	0.26	+0.2
3,401,337	+		CCNA_03236	0.26	-0.4
3,401,337	+		CCNA_03236	0.26	+2.8
3,401,345	-		CCNA_03236	0.27	-0.1
3,401,345	-		CCNA_03236	0.27	+1.2
3,401,390	-		CCNA_03236	0.32	+0.2
3,401,457	+		CCNA_03236	0.40	-0.1
3,401,531	+		CCNA_03236	0.48	-0.1
3,401,540	-		CCNA_03236	0.49	-0.8
3,401,552	+		CCNA_03236	0.51	+0.6
3,401,557	+		CCNA_03236	0.51	+1.2
3,401,562	+		CCNA_03236	0.52	-0.4
3,401,562	+		CCNA_03236	0.52	+0.6
3,401,562	+		CCNA_03236	0.52	+0.3
3,401,570	-		CCNA_03236	0.53	+1.1
3,401,570	-		CCNA_03236	0.53	+0.6
3,401,570	-		CCNA_03236	0.53	+1.5
3,401,631	+		CCNA_03236	0.60	+0.6
3,401,639	-		CCNA_03236	0.61	+1.0
3,401,681	+		CCNA_03236	0.65	-1.1
3,401,696	-		CCNA_03236	0.67	+1.0
3,401,705	+		CCNA_03236	0.68	+0.9
3,401,709	-		CCNA_03236	0.68	+0.9
3,401,709	-				+2.2
3,401,709	-		CCNA_03236	0.68	+1.2
3,401,713	-		CCNA_03236	0.69	-0.4
3,401,713	-		CCNA_03236	0.69	-1.1
3,401,747	-		CCNA_03236	0.73	+2.5
3,401,766	-		CCNA_03236	0.75	+2.8
3,401,766	-		CCNA_03236	0.75	+2.8
3,401,840	+		CCNA_03236	0.83	+2.1
3,401,848	-		CCNA_03236	0.84	+0.6
3,401,850	+		CCNA_03236	0.85	+1.1
3,401,910	-				+1.2
3,401,939	-				-0.3
3,402,086	-				-0.2
3,402,157	-				+0.4
3,402,157	-				+1.3
3,402,162	-				+1.8
3,402,191	+				+1.3
3,402,208	+				-1.2
3,402,213	+				+0.6
3,402,213	+				+1.2
3,402,216	-				+0.6
3,402,216	-				+1.2
3,402,216	-				+1.8
3,402,216	-				+1.0
3,402,216	-				+1.6
3,402,221	-		CCNA_03238	0.10	+1.7
3,402,378	-		CCNA_03238	0.27	+1.2
3,402,386	+		CCNA_03238	0.28	+1.5
3,402,386	+		CCNA_03238	0.28	+1.8
3,402,386	+		CCNA_03238	0.28	+0.2
3,402,386	+		CCNA_03238	0.28	+0.6
3,402,386	+		CCNA_03238	0.28	+1.2
3,402,386	+		CCNA_03238	0.28	+0.2
3,402,386	+		CCNA_03238	0.28	+1.2
3,402,394	-		CCNA_03238	0.29	-0.5
3,402,394	-		CCNA_03238	0.29	-0.6
3,402,394	-		CCNA_03238	0.29	+1.7
3,402,394	-		CCNA_03238	0.29	+0.2
3,402,394	-		CCNA_03238	0.29	+0.2
3,402,394	-		CCNA_03238	0.29	+1.7
3,402,394	-		CCNA_03238	0.29	-0.6
3,402,394	-		CCNA_03238	0.29	+3.8
3,402,394	-		CCNA_03238	0.29	+0.6
3,402,394	-		CCNA_03238	0.29	+1.2
3,402,394	-		CCNA_03238	0.29	+0.9
3,402,420	+		CCNA_03238	0.32	+0.6
3,402,420	+		CCNA_03238	0.32	-0.1
3,402,420	+		CCNA_03238	0.32	+1.2
3,402,428	-		CCNA_03238	0.33	+0.5
3,402,428	-		CCNA_03238	0.33	+1.2
3,402,428	-		CCNA_03238	0.33	-0.1
3,402,428	-		CCNA_03238	0.33	+0.4
3,402,428	-		CCNA_03238	0.33	+2.7
3,402,428	-		CCNA_03238	0.33	+0.5
3,402,438	-		CCNA_03238	0.34	+0.6
3,402,455	-		CCNA_03238	0.36	+2.1
3,402,457	+		CCNA_03238	0.36	+1.2
3,402,457	+		CCNA_03238	0.36	-1.6
3,402,457	+		CCNA_03238	0.36	+1.6
3,402,465	-		CCNA_03238	0.37	+0.6
3,402,465	-		CCNA_03238	0.37	+1.0
3,402,465	-		CCNA_03238	0.37	-0.1
3,402,465	-		CCNA_03238	0.37	+0.2
3,402,467	+		CCNA_03238	0.37	+0.2
3,402,467	+		CCNA_03238	0.37	+1.2
3,402,467	+		CCNA_03238	0.37	+0.6
3,402,475	-		CCNA_03238	0.38	-1.4
3,402,475	-		CCNA_03238	0.38	+1.4
3,402,475	-		CCNA_03238	0.38	+1.5
3,402,488	-		CCNA_03238	0.39	+2.5
3,402,498	-		CCNA_03238	0.40	+0.2
3,402,503	-		CCNA_03238	0.41	+2.8
3,402,520	-		CCNA_03238	0.43	+1.4
3,402,520	-		CCNA_03238	0.43	+0.6
3,402,552	+		CCNA_03238	0.46	-0.1
3,402,575	+		CCNA_03238	0.49	+2.2
3,402,578	-		CCNA_03238	0.49	+0.0
3,402,578	-		CCNA_03238	0.49	+1.4
3,402,638	-		CCNA_03238	0.55	+1.6
3,402,649	+		CCNA_03238	0.57	-0.1
3,402,674	+		CCNA_03238	0.59	+2.2
3,402,674	-		CCNA_03238	0.59	+1.0
3,402,674	-		CCNA_03238	0.59	+1.2
3,402,679	+		CCNA_03238	0.60	+0.3
3,402,687	-		CCNA_03238	0.61	-4.7
3,402,692	+		CCNA_03238	0.61	+1.0
3,402,728	+		CCNA_03238	0.65	+1.6
3,402,728	+		CCNA_03238	0.65	-1.0
3,402,730	-		CCNA_03238	0.65	-0.1
3,402,735	-		CCNA_03238	0.66	+0.5
3,402,736	-		CCNA_03238	0.66	-0.4
3,402,751	+		CCNA_03238	0.68	-0.6
3,402,787	+		CCNA_03238	0.72	-0.6
3,402,794	-		CCNA_03238	0.72	+1.8
3,402,795	-		CCNA_03238	0.73	+0.6
3,402,799	+		CCNA_03238	0.73	+0.2
3,402,807	-		CCNA_03238	0.74	+0.7
3,402,842	-		CCNA_03238	0.78	+1.3
3,402,868	+		CCNA_03238	0.80	+2.0
3,402,901	-		CCNA_03238	0.84	+2.2
3,402,929	+		CCNA_03238	0.87	+0.6
3,402,937	-		CCNA_03238	0.88	+0.2
3,402,938	+		CCNA_03238	0.88	-0.7
3,402,953	+		CCNA_03238	0.90	+1.2
3,402,961	-				-1.1
3,402,966	-				+1.4
3,402,968	+				-1.0
3,402,973	+				+1.5
3,402,981	-				+1.2