Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03041

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
3,195,760	-		CCNA_03040	0.41	+1.1
3,195,770	+		CCNA_03040	0.41	-0.1
3,195,778	-		CCNA_03040	0.42	+1.1
3,195,778	-		CCNA_03040	0.42	+1.1
3,195,794	+		CCNA_03040	0.43	+1.1
3,195,794	+		CCNA_03040	0.43	-1.5
3,195,794	+		CCNA_03040	0.43	+1.2
3,195,794	+		CCNA_03040	0.43	-0.6
3,195,799	+		CCNA_03040	0.43	-0.9
3,195,802	-		CCNA_03040	0.43	+1.5
3,195,802	-		CCNA_03040	0.43	+1.2
3,195,802	-		CCNA_03040	0.43	+1.0
3,195,866	+		CCNA_03040	0.47	-1.1
3,195,869	-		CCNA_03040	0.47	+1.9
3,195,871	+		CCNA_03040	0.47	-2.2
3,195,874	-				+3.8
3,195,876	+		CCNA_03040	0.48	+0.7
3,195,876	+		CCNA_03040	0.48	-0.1
3,195,876	+		CCNA_03040	0.48	+0.1
3,195,884	-		CCNA_03040	0.48	+1.0
3,195,884	-		CCNA_03040	0.48	+1.2
3,195,885	-		CCNA_03040	0.48	+1.7
3,195,885	-		CCNA_03040	0.48	+0.9
3,195,909	-		CCNA_03040	0.50	+1.6
3,195,933	+		CCNA_03040	0.51	-1.1
3,195,944	-		CCNA_03040	0.52	+1.4
3,195,960	+		CCNA_03040	0.53	-1.7
3,195,968	-		CCNA_03040	0.53	+1.3
3,195,968	-		CCNA_03040	0.53	+0.9
3,195,976	+		CCNA_03040	0.54	-1.6
3,195,984	-		CCNA_03040	0.54	+1.3
3,195,986	+		CCNA_03040	0.54	+0.1
3,195,986	+		CCNA_03040	0.54	-1.1
3,196,029	+		CCNA_03040	0.57	+0.2
3,196,037	-		CCNA_03040	0.57	+1.0
3,196,052	+		CCNA_03040	0.58	-1.5
3,196,055	-		CCNA_03040	0.58	+1.2
3,196,081	-		CCNA_03040	0.60	+1.2
3,196,086	+		CCNA_03040	0.60	+0.3
3,196,093	-		CCNA_03040	0.61	+1.2
3,196,094	-		CCNA_03040	0.61	+1.2
3,196,113	-		CCNA_03040	0.62	+0.5
3,196,123	-				+0.9
3,196,123	-		CCNA_03040	0.62	+1.0
3,196,166	+		CCNA_03040	0.65	-0.6
3,196,166	+		CCNA_03040	0.65	-0.8
3,196,199	+		CCNA_03040	0.67	+0.4
3,196,199	+		CCNA_03040	0.67	+0.3
3,196,199	+		CCNA_03040	0.67	-0.4
3,196,199	+		CCNA_03040	0.67	-1.2
3,196,199	+		CCNA_03040	0.67	+1.4
3,196,199	+		CCNA_03040	0.67	+0.9
3,196,199	+		CCNA_03040	0.67	-0.8
3,196,199	+		CCNA_03040	0.67	-0.6
3,196,207	-		CCNA_03040	0.67	+1.7
3,196,207	-		CCNA_03040	0.67	+2.1
3,196,272	-		CCNA_03040	0.71	+1.1
3,196,305	-		CCNA_03040	0.73	+1.3
3,196,322	-		CCNA_03040	0.74	+0.4
3,196,337	+		CCNA_03040	0.75	+0.6
3,196,342	-		CCNA_03040	0.75	+2.1
3,196,343	+		CCNA_03040	0.75	+0.3
3,196,356	-		CCNA_03040	0.76	+0.8
3,196,359	+		CCNA_03040	0.76	+1.2
3,196,369	+		CCNA_03040	0.77	-0.9
3,196,383	+		CCNA_03040	0.78	-0.4
3,196,397	+		CCNA_03040	0.79	+0.8
3,196,405	-		CCNA_03040	0.79	-0.3
3,196,423	-		CCNA_03040	0.80	+0.6
3,196,425	+		CCNA_03040	0.80	+0.7
3,196,432	+		CCNA_03040	0.81	-0.2
3,196,449	+		CCNA_03040	0.82	-1.7
3,196,449	+		CCNA_03040	0.82	+0.4
3,196,454	+		CCNA_03040	0.82	-0.4
3,196,457	-		CCNA_03040	0.82	+0.8
3,196,479	+		CCNA_03040	0.83	-0.1
3,196,479	+		CCNA_03040	0.83	+1.1
3,196,487	-		CCNA_03040	0.84	+1.4
3,196,487	-		CCNA_03040	0.84	+0.9
3,196,487	-		CCNA_03040	0.84	+1.5
3,196,487	-		CCNA_03040	0.84	+1.3
3,196,505	+		CCNA_03040	0.85	+0.0
3,196,543	-		CCNA_03040	0.87	+1.8
3,196,553	+		CCNA_03040	0.88	+0.2
3,196,567	-		CCNA_03040	0.89	+1.4
3,196,606	+				+0.1
3,196,613	+				+1.2
3,196,622	-				+1.0
3,196,656	+				+0.6
3,196,656	+				+0.5
3,196,664	-				+0.9
3,196,664	-				+2.1
3,196,731	+				-0.4
3,196,751	+				-2.3
3,196,759	-				+1.7
3,196,759	-				+1.2
3,196,759	-				+0.2
3,196,777	+				+0.6
3,196,818	-				+1.5
3,196,829	-				+0.7
3,196,872	+		CCNA_03041	0.13	-0.4
3,196,881	-		CCNA_03041	0.14	+1.0
3,196,895	+		CCNA_03041	0.16	-0.4
3,196,895	+		CCNA_03041	0.16	-1.8
3,196,903	-		CCNA_03041	0.17	+3.2
3,196,906	+		CCNA_03041	0.17	+0.4
3,196,906	+		CCNA_03041	0.17	+0.0
3,196,906	+		CCNA_03041	0.17	+0.9
3,196,906	+		CCNA_03041	0.17	+0.5
3,196,914	-		CCNA_03041	0.18	+1.4
3,196,914	-		CCNA_03041	0.18	-0.1
3,196,914	-		CCNA_03041	0.18	+0.9
3,196,914	-		CCNA_03041	0.18	+2.2
3,196,914	-		CCNA_03041	0.18	+0.6
3,196,914	-		CCNA_03041	0.18	+2.5
3,196,923	+		CCNA_03041	0.19	+0.3
3,196,931	-		CCNA_03041	0.20	+1.4
3,196,985	+				+1.2
3,196,993	-		CCNA_03041	0.27	-0.2
3,196,993	-		CCNA_03041	0.27	+1.9
3,196,993	-		CCNA_03041	0.27	+1.2
3,197,003	-		CCNA_03041	0.28	+1.1
3,197,003	-		CCNA_03041	0.28	+0.5
3,197,043	+		CCNA_03041	0.32	-0.4
3,197,046	-		CCNA_03041	0.33	+1.6
3,197,047	-		CCNA_03041	0.33	+1.6
3,197,075	-		CCNA_03041	0.36	+1.0
3,197,123	-		CCNA_03041	0.41	+0.7
3,197,176	+		CCNA_03041	0.47	+0.8
3,197,184	-		CCNA_03041	0.48	+1.6
3,197,184	-		CCNA_03041	0.48	+1.9
3,197,219	+		CCNA_03041	0.52	+0.3
3,197,227	-		CCNA_03041	0.53	+1.6
3,197,241	+		CCNA_03041	0.55	+0.1
3,197,253	-		CCNA_03041	0.56	+1.0
3,197,258	-		CCNA_03041	0.56	+1.1
3,197,290	-		CCNA_03041	0.60	+0.3
3,197,290	-		CCNA_03041	0.60	+1.0
3,197,313	-		CCNA_03041	0.63	+0.8
3,197,348	+		CCNA_03041	0.67	-0.7
3,197,356	-				+0.5
3,197,370	+		CCNA_03041	0.69	-1.1
3,197,394	-		CCNA_03041	0.72	+1.9
3,197,464	-		CCNA_03041	0.80	+0.7
3,197,471	+		CCNA_03041	0.80	-0.8
3,197,480	+		CCNA_03041	0.81	+1.3
3,197,484	+		CCNA_03041	0.82	+0.1
3,197,488	-		CCNA_03041	0.82	+1.1
3,197,492	-		CCNA_03041	0.83	+1.5
3,197,499	-		CCNA_03041	0.83	+0.6
3,197,506	-		CCNA_03041	0.84	+0.8
3,197,540	-		CCNA_03041	0.88	+0.8
3,197,541	-		CCNA_03041	0.88	+1.4
3,197,571	-				+1.5
3,197,583	-				+1.1
3,197,583	-				+1.0
3,197,599	+				-0.2
3,197,612	-				+1.0
3,197,614	+				+2.6
3,197,622	-				+1.5
3,197,644	+				+2.2
3,197,659	+				-0.0
3,197,659	+				-0.9
3,197,659	+				+0.8
3,197,659	+				-0.7
3,197,659	+				-1.1
3,197,659	+				+0.6
3,197,659	+				-1.4
3,197,659	+				-0.0
3,197,659	+				+0.9
3,197,660	-				+0.4
3,197,660	-				+0.8
3,197,667	-				+0.5
3,197,667	-				+0.6
3,197,667	-				+0.8
3,197,667	-				+0.6
3,197,673	-				-0.2
3,197,731	+				-0.9
3,197,760	-				+1.2
3,197,760	-				+1.0
3,197,760	-				+1.6
3,197,818	-				+0.6
3,197,822	+				-0.4
3,197,822	+				-0.1
3,197,830	-				-1.0
3,197,830	-				-0.0
3,197,847	-				-0.8
3,197,847	-				-1.0
3,197,854	+				-0.1
3,197,862	-				-0.2
3,197,911	+		CCNA_03042	0.15	+1.2
3,197,911	+		CCNA_03042	0.15	-1.6
3,197,914	-		CCNA_03042	0.15	-0.4
3,197,914	-		CCNA_03042	0.15	-0.9
3,197,914	-		CCNA_03042	0.15	-0.6
3,197,919	-		CCNA_03042	0.16	-0.3
3,197,919	-		CCNA_03042	0.16	+1.8
3,197,946	+		CCNA_03042	0.21	-0.3
3,197,976	-		CCNA_03042	0.27	+0.0
3,197,981	-		CCNA_03042	0.28	-0.6
3,198,010	+		CCNA_03042	0.34	-0.8
3,198,010	+		CCNA_03042	0.34	-0.1
3,198,010	+		CCNA_03042	0.34	+0.6
3,198,010	+		CCNA_03042	0.34	-2.5
3,198,010	+		CCNA_03042	0.34	+0.6
3,198,010	+		CCNA_03042	0.34	+1.2
3,198,018	-		CCNA_03042	0.35	-2.5
3,198,018	-		CCNA_03042	0.35	+0.4
3,198,018	-		CCNA_03042	0.35	-0.7
3,198,018	-		CCNA_03042	0.35	+0.2
3,198,018	-		CCNA_03042	0.35	-0.3
3,198,018	-		CCNA_03042	0.35	+1.3
3,198,018	-		CCNA_03042	0.35	-0.0
3,198,035	+		CCNA_03042	0.39	-0.6
3,198,042	+		CCNA_03042	0.40	+1.2
3,198,049	+		CCNA_03042	0.42	-1.8
3,198,049	+		CCNA_03042	0.42	-1.3
3,198,085	-		CCNA_03042	0.49	+0.2
3,198,094	+		CCNA_03042	0.50	-1.8
3,198,119	-		CCNA_03042	0.55	-0.1
3,198,137	+		CCNA_03042	0.59	-0.4
3,198,137	+		CCNA_03042	0.59	+2.2
3,198,138	-		CCNA_03042	0.59	-0.7
3,198,145	-		CCNA_03042	0.60	-0.1
3,198,145	-		CCNA_03042	0.60	-1.6
3,198,147	+		CCNA_03042	0.61	+0.6
3,198,151	-		CCNA_03042	0.61	-0.5
3,198,174	+		CCNA_03042	0.66	+0.4
3,198,182	-		CCNA_03042	0.67	+0.9
3,198,187	-		CCNA_03042	0.68	-0.8
3,198,198	+		CCNA_03042	0.71	+0.6
3,198,203	+		CCNA_03042	0.72	-0.6
3,198,203	+		CCNA_03042	0.72	+1.2
3,198,203	+		CCNA_03042	0.72	-0.9
3,198,211	-		CCNA_03042	0.73	-1.0
3,198,211	-		CCNA_03042	0.73	-0.7
3,198,211	-		CCNA_03042	0.73	-0.1
3,198,216	-		CCNA_03042	0.74	-0.2
3,198,230	+		CCNA_03042	0.77	+0.9
3,198,235	+		CCNA_03042	0.78	-0.1
3,198,248	-				+1.0
3,198,274	+		CCNA_03042	0.85	+0.2
3,198,296	+		CCNA_03042	0.90	+1.1
3,198,300	-				-0.0
3,198,309	-				-0.6
3,198,314	-				+2.2
3,198,331	+				+1.6
3,198,331	+				+0.1
3,198,331	+				-0.4
3,198,339	-				-0.5
3,198,367	-				-0.3
3,198,376	+				-0.3
3,198,389	-				+1.2
3,198,474	-				+0.1
3,198,478	+				+0.6
3,198,491	+				+0.6
3,198,521	+				+0.6
3,198,529	-				+0.5
3,198,587	-		CCNA_03043	0.36	+0.9
3,198,587	-				-0.1
3,198,591	+		CCNA_03043	0.38	+0.5
3,198,591	-		CCNA_03043	0.38	-1.9
3,198,635	-		CCNA_03043	0.62	+0.8
3,198,637	-		CCNA_03043	0.63	+0.6