Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02980

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
3,134,635	+		CCNA_02979	0.18	-0.0
3,134,678	-		CCNA_02979	0.22	+0.5
3,134,683	-		CCNA_02979	0.22	-0.1
3,134,683	-		CCNA_02979	0.22	-0.5
3,134,683	-		CCNA_02979	0.22	-0.4
3,134,683	-		CCNA_02979	0.22	-1.5
3,134,683	-		CCNA_02979	0.22	-0.4
3,134,683	-		CCNA_02979	0.22	-0.2
3,134,683	-		CCNA_02979	0.22	+1.0
3,134,683	-		CCNA_02979	0.22	+1.3
3,134,683	-		CCNA_02979	0.22	+0.2
3,134,683	-		CCNA_02979	0.22	+0.0
3,134,715	-		CCNA_02979	0.25	-0.3
3,134,717	+		CCNA_02979	0.25	-1.7
3,134,754	+		CCNA_02979	0.28	+0.7
3,134,762	+		CCNA_02979	0.29	-2.5
3,134,779	-		CCNA_02979	0.30	+0.5
3,134,779	-		CCNA_02979	0.30	-0.3
3,134,785	+		CCNA_02979	0.31	-0.5
3,134,808	-		CCNA_02979	0.33	+0.7
3,134,873	-		CCNA_02979	0.38	-0.8
3,134,873	-		CCNA_02979	0.38	-0.1
3,134,873	-		CCNA_02979	0.38	-0.2
3,134,882	+		CCNA_02979	0.39	+0.9
3,134,961	-		CCNA_02979	0.46	-0.0
3,135,057	+		CCNA_02979	0.54	-2.8
3,135,075	+		CCNA_02979	0.55	-2.4
3,135,091	+		CCNA_02979	0.57	-0.5
3,135,091	+		CCNA_02979	0.57	-0.5
3,135,094	-		CCNA_02979	0.57	+0.7
3,135,117	+		CCNA_02979	0.59	-3.3
3,135,122	+		CCNA_02979	0.59	-0.9
3,135,125	-		CCNA_02979	0.59	+0.5
3,135,134	-		CCNA_02979	0.60	-0.1
3,135,148	+		CCNA_02979	0.61	-1.0
3,135,156	-		CCNA_02979	0.62	-0.0
3,135,161	-		CCNA_02979	0.62	+0.5
3,135,162	+		CCNA_02979	0.63	-0.4
3,135,167	+		CCNA_02979	0.63	-1.6
3,135,167	+		CCNA_02979	0.63	-0.9
3,135,199	-		CCNA_02979	0.66	+1.7
3,135,210	+		CCNA_02979	0.67	+1.7
3,135,222	+		CCNA_02979	0.68	+0.6
3,135,222	+		CCNA_02979	0.68	-1.5
3,135,222	+		CCNA_02979	0.68	-1.0
3,135,222	+		CCNA_02979	0.68	-0.8
3,135,225	-		CCNA_02979	0.68	-0.4
3,135,225	-		CCNA_02979	0.68	+0.3
3,135,230	-		CCNA_02979	0.68	-1.6
3,135,230	-		CCNA_02979	0.68	+0.2
3,135,230	-		CCNA_02979	0.68	-0.1
3,135,235	-		CCNA_02979	0.69	-1.3
3,135,280	+		CCNA_02979	0.72	-2.3
3,135,280	+		CCNA_02979	0.72	-0.2
3,135,280	+		CCNA_02979	0.72	-2.0
3,135,280	+		CCNA_02979	0.72	-1.2
3,135,288	-		CCNA_02979	0.73	-1.5
3,135,288	-		CCNA_02979	0.73	+0.5
3,135,288	-		CCNA_02979	0.73	-2.1
3,135,288	-		CCNA_02979	0.73	-2.8
3,135,288	-		CCNA_02979	0.73	-1.1
3,135,310	-		CCNA_02979	0.75	-0.2
3,135,318	+				-0.5
3,135,331	-		CCNA_02979	0.77	+0.3
3,135,331	-		CCNA_02979	0.77	-0.7
3,135,338	-		CCNA_02979	0.77	-0.9
3,135,342	+		CCNA_02979	0.78	+0.3
3,135,355	+		CCNA_02979	0.79	+0.1
3,135,387	+		CCNA_02979	0.82	-1.6
3,135,395	-		CCNA_02979	0.82	+0.3
3,135,395	-		CCNA_02979	0.82	+0.4
3,135,400	+		CCNA_02979	0.83	+1.2
3,135,407	-		CCNA_02979	0.83	+0.5
3,135,408	-		CCNA_02979	0.83	+0.3
3,135,408	-		CCNA_02979	0.83	+0.6
3,135,408	-		CCNA_02979	0.83	-0.5
3,135,413	-		CCNA_02979	0.84	-1.4
3,135,426	-		CCNA_02979	0.85	+1.7
3,135,460	-		CCNA_02979	0.88	-1.2
3,135,463	+		CCNA_02979	0.88	-2.0
3,135,465	-				+1.3
3,135,471	-		CCNA_02979	0.89	-0.5
3,135,478	+		CCNA_02979	0.89	-2.5
3,135,485	-		CCNA_02979	0.90	-0.2
3,135,493	+				+0.2
3,135,493	+				-2.3
3,135,508	-				+1.3
3,135,587	-				+0.7
3,135,587	-				+0.4
3,135,594	-				+1.0
3,135,625	+				+2.3
3,135,633	+				+0.3
3,135,701	+		CCNA_02980	0.15	+0.7
3,135,706	+		CCNA_02980	0.16	-0.0
3,135,710	-		CCNA_02980	0.16	+0.9
3,135,710	-		CCNA_02980	0.16	+0.4
3,135,748	-		CCNA_02980	0.21	+1.2
3,135,748	-		CCNA_02980	0.21	+0.9
3,135,748	-		CCNA_02980	0.21	+1.4
3,135,806	-		CCNA_02980	0.28	+0.1
3,135,819	+		CCNA_02980	0.30	+0.3
3,135,827	-		CCNA_02980	0.31	+1.3
3,135,827	-		CCNA_02980	0.31	+1.7
3,135,832	-		CCNA_02980	0.32	+1.2
3,135,846	-		CCNA_02980	0.33	+0.3
3,135,853	-		CCNA_02980	0.34	+1.1
3,135,871	-		CCNA_02980	0.37	+1.9
3,135,881	-		CCNA_02980	0.38	+0.1
3,135,884	+		CCNA_02980	0.38	-0.0
3,135,891	-		CCNA_02980	0.39	+0.5
3,135,929	-		CCNA_02980	0.44	+1.0
3,135,931	-		CCNA_02980	0.44	+0.9
3,135,931	-		CCNA_02980	0.44	+1.0
3,135,981	+		CCNA_02980	0.51	-0.3
3,135,989	-		CCNA_02980	0.52	-0.3
3,135,989	-		CCNA_02980	0.52	+1.4
3,136,006	-		CCNA_02980	0.54	+1.0
3,136,006	-		CCNA_02980	0.54	+0.6
3,136,007	-		CCNA_02980	0.54	+1.1
3,136,014	-		CCNA_02980	0.55	+1.0
3,136,024	+		CCNA_02980	0.56	+1.3
3,136,032	+		CCNA_02980	0.57	+2.3
3,136,040	-		CCNA_02980	0.58	+1.1
3,136,054	+		CCNA_02980	0.60	+1.3
3,136,057	-		CCNA_02980	0.60	+0.9
3,136,075	-		CCNA_02980	0.62	+1.0
3,136,102	+		CCNA_02980	0.66	-0.5
3,136,102	+		CCNA_02980	0.66	-1.1
3,136,112	+		CCNA_02980	0.67	+0.7
3,136,120	-		CCNA_02980	0.68	+1.2
3,136,141	-		CCNA_02980	0.71	+0.9
3,136,170	+		CCNA_02980	0.74	-0.5
3,136,171	-		CCNA_02980	0.74	+1.3
3,136,178	-		CCNA_02980	0.75	+0.5
3,136,207	+		CCNA_02980	0.79	-1.4
3,136,213	+		CCNA_02980	0.80	+0.1
3,136,221	-		CCNA_02980	0.81	+0.7
3,136,248	-		CCNA_02980	0.84	+1.3
3,136,252	+		CCNA_02980	0.85	-0.5
3,136,253	-		CCNA_02980	0.85	+0.9
3,136,262	+		CCNA_02980	0.86	-1.1
3,136,277	+		CCNA_02980	0.88	+0.7
3,136,283	-		CCNA_02980	0.89	+1.1
3,136,285	-		CCNA_02980	0.89	+0.9
3,136,285	-		CCNA_02980	0.89	+1.2
3,136,317	+				-0.0
3,136,318	-				+1.0
3,136,325	-				+0.7
3,136,335	+				+1.3
3,136,361	+				-0.3
3,136,363	-				+0.2
3,136,363	-				+0.2
3,136,379	+				+0.6
3,136,387	-				+0.0
3,136,387	-				-1.3
3,136,387	-				+0.7
3,136,387	-				-2.3
3,136,406	+				+0.7
3,136,414	-				+0.5
3,136,414	-				-1.9
3,136,435	+				-0.3
3,136,583	+		CCNA_02981	0.23	+0.0
3,136,611	-		CCNA_02981	0.29	+2.3
3,136,661	+		CCNA_02981	0.40	+0.4
3,136,661	+		CCNA_02981	0.40	-0.3
3,136,661	+		CCNA_02981	0.40	+2.1
3,136,669	-		CCNA_02981	0.42	-0.2
3,136,669	-		CCNA_02981	0.42	-1.4
3,136,683	+		CCNA_02981	0.45	+1.1
3,136,683	+		CCNA_02981	0.45	+0.8
3,136,683	+		CCNA_02981	0.45	+0.8
3,136,691	-		CCNA_02981	0.47	+0.8
3,136,691	-		CCNA_02981	0.47	-0.4
3,136,718	+		CCNA_02981	0.53	+0.3
3,136,724	-		CCNA_02981	0.54	-0.3
3,136,731	+		CCNA_02981	0.56	+0.3
3,136,850	-		CCNA_02981	0.81	+0.1
3,136,868	+		CCNA_02981	0.85	-0.7
3,136,868	+		CCNA_02981	0.85	-2.3
3,136,868	+		CCNA_02981	0.85	+1.1
3,136,876	-		CCNA_02981	0.87	+1.3
3,136,888	+		CCNA_02981	0.90	-0.4
3,136,888	+		CCNA_02981	0.90	-1.1
3,136,896	-				+1.3
3,136,901	+				-1.3
3,136,929	-				-0.0
3,136,955	+				-0.2
3,136,960	+				+0.2
3,137,010	-				+0.7
3,137,058	+				-0.9
3,137,059	+				-2.1
3,137,069	-				+0.7
3,137,074	-				-0.5
3,137,085	+				+0.1
3,137,095	+				-0.3
3,137,096	+				-0.1
3,137,103	-				+0.7
3,137,148	+				+1.5
3,137,189	+				-1.2
3,137,206	+				-1.3
3,137,206	-				+1.3
3,137,226	+				+0.8
3,137,319	+		CCNA_02982	0.18	+1.0
3,137,319	+		CCNA_02982	0.18	-0.5
3,137,319	+		CCNA_02982	0.18	-1.5
3,137,319	+		CCNA_02982	0.18	+0.3
3,137,319	+		CCNA_02982	0.18	+2.3
3,137,319	+		CCNA_02982	0.18	+0.0
3,137,319	+		CCNA_02982	0.18	+0.1
3,137,319	+				+1.3
3,137,319	+				+1.6
3,137,327	-		CCNA_02982	0.18	+0.7
3,137,327	-		CCNA_02982	0.18	-2.1
3,137,327	-		CCNA_02982	0.18	-0.0
3,137,327	-		CCNA_02982	0.18	-1.6
3,137,327	-		CCNA_02982	0.18	+1.3
3,137,327	-		CCNA_02982	0.18	-1.1
3,137,327	-		CCNA_02982	0.18	-0.7
3,137,327	-		CCNA_02982	0.18	+0.2
3,137,355	+		CCNA_02982	0.21	-0.9
3,137,355	+		CCNA_02982	0.21	-0.4
3,137,355	+		CCNA_02982	0.21	-1.9
3,137,355	+		CCNA_02982	0.21	-0.7
3,137,363	-		CCNA_02982	0.21	-2.4
3,137,368	-		CCNA_02982	0.22	-0.4