Experiment: PYE 0.5x 30C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01755 and CCNA_01756 are separated by 97 nucleotides CCNA_01756 and CCNA_01757 are separated by 63 nucleotides CCNA_01757 and CCNA_01758 are separated by 44 nucleotides
CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437
_01755
CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654
_01756
CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548
_01757
CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594
_01758
Position (kb)
1883
1884
1885 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1882.734 kb on - strand, within CCNA_01755 at 1882.744 kb on - strand, within CCNA_01755 at 1882.774 kb on - strand, within CCNA_01755 at 1882.791 kb on + strand, within CCNA_01755 at 1882.857 kb on + strand, within CCNA_01755 at 1882.875 kb on - strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.919 kb on - strand, within CCNA_01755 at 1882.921 kb on + strand, within CCNA_01755 at 1883.012 kb on - strand, within CCNA_01755 at 1883.039 kb on - strand, within CCNA_01755 at 1883.039 kb on - strand, within CCNA_01755 at 1883.099 kb on + strand, within CCNA_01755 at 1883.111 kb on - strand, within CCNA_01755 at 1883.192 kb on - strand, within CCNA_01755 at 1883.216 kb on - strand, within CCNA_01755 at 1883.226 kb on + strand, within CCNA_01755 at 1883.234 kb on - strand, within CCNA_01755 at 1883.282 kb on + strand at 1883.288 kb on - strand at 1883.298 kb on - strand at 1883.318 kb on + strand at 1883.326 kb on - strand at 1883.369 kb on + strand at 1883.381 kb on + strand at 1883.384 kb on - strand at 1883.434 kb on - strand at 1883.437 kb on + strand at 1883.440 kb on - strand at 1883.445 kb on - strand at 1883.445 kb on - strand at 1883.464 kb on + strand at 1883.466 kb on + strand at 1883.631 kb on + strand, within CCNA_01756 at 1883.636 kb on + strand, within CCNA_01756 at 1883.676 kb on - strand at 1883.726 kb on - strand at 1883.738 kb on + strand at 1883.943 kb on - strand, within CCNA_01757 at 1884.027 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.357 kb on - strand, within CCNA_01757 at 1884.383 kb on - strand, within CCNA_01757 at 1884.556 kb on + strand at 1884.556 kb on + strand at 1884.586 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days remove 1,882,734 - CCNA_01755 0.57 +1.0 1,882,744 - CCNA_01755 0.58 +0.3 1,882,774 - CCNA_01755 0.60 +0.4 1,882,791 + CCNA_01755 0.61 +0.2 1,882,857 + CCNA_01755 0.65 +0.8 1,882,875 - CCNA_01755 0.66 +0.8 1,882,911 + CCNA_01755 0.68 -0.4 1,882,911 + CCNA_01755 0.68 +1.0 1,882,919 - CCNA_01755 0.69 -1.0 1,882,921 + CCNA_01755 0.69 +2.0 1,883,012 - CCNA_01755 0.74 -0.4 1,883,039 - CCNA_01755 0.76 -1.0 1,883,039 - CCNA_01755 0.76 -0.3 1,883,099 + CCNA_01755 0.79 -0.9 1,883,111 - CCNA_01755 0.80 +1.0 1,883,192 - CCNA_01755 0.85 -1.6 1,883,216 - CCNA_01755 0.87 -0.3 1,883,226 + CCNA_01755 0.87 -0.9 1,883,234 - CCNA_01755 0.88 +1.0 1,883,282 + -1.1 1,883,288 - -2.7 1,883,298 - -0.2 1,883,318 + -0.8 1,883,326 - -0.8 1,883,369 + -1.2 1,883,381 + -1.7 1,883,384 - +0.6 1,883,434 - +0.2 1,883,437 + +0.6 1,883,440 - -0.4 1,883,445 - +0.4 1,883,445 - +0.6 1,883,464 + +0.1 1,883,466 + -1.7 1,883,631 + CCNA_01756 0.80 +2.0 1,883,636 + CCNA_01756 0.84 +0.8 1,883,676 - +0.5 1,883,726 - +1.1 1,883,738 + -0.2 1,883,943 - CCNA_01757 0.27 +0.6 1,884,027 - CCNA_01757 0.37 +1.6 1,884,037 - CCNA_01757 0.38 +1.6 1,884,357 - CCNA_01757 0.77 +2.6 1,884,383 - CCNA_01757 0.80 +2.6 1,884,556 + +0.2 1,884,556 + -0.4 1,884,586 - +0.7 1,884,598 - +0.3 1,884,598 - +0.2 1,884,598 - -0.6
Or see this region's nucleotide sequence