Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01757

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01755 and CCNA_01756 are separated by 97 nucleotidesCCNA_01756 and CCNA_01757 are separated by 63 nucleotidesCCNA_01757 and CCNA_01758 are separated by 44 nucleotides CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437 _01755 CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654 _01756 CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548 _01757 CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594 _01758 Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -2 -1 0 1 2at 1882.734 kb on - strand, within CCNA_01755at 1882.744 kb on - strand, within CCNA_01755at 1882.774 kb on - strand, within CCNA_01755at 1882.791 kb on + strand, within CCNA_01755at 1882.857 kb on + strand, within CCNA_01755at 1882.875 kb on - strand, within CCNA_01755at 1882.911 kb on + strand, within CCNA_01755at 1882.911 kb on + strand, within CCNA_01755at 1882.919 kb on - strand, within CCNA_01755at 1882.921 kb on + strand, within CCNA_01755at 1883.012 kb on - strand, within CCNA_01755at 1883.039 kb on - strand, within CCNA_01755at 1883.039 kb on - strand, within CCNA_01755at 1883.099 kb on + strand, within CCNA_01755at 1883.111 kb on - strand, within CCNA_01755at 1883.192 kb on - strand, within CCNA_01755at 1883.216 kb on - strand, within CCNA_01755at 1883.226 kb on + strand, within CCNA_01755at 1883.234 kb on - strand, within CCNA_01755at 1883.282 kb on + strandat 1883.288 kb on - strandat 1883.298 kb on - strandat 1883.318 kb on + strandat 1883.326 kb on - strandat 1883.369 kb on + strandat 1883.381 kb on + strandat 1883.384 kb on - strandat 1883.434 kb on - strandat 1883.437 kb on + strandat 1883.440 kb on - strandat 1883.445 kb on - strandat 1883.445 kb on - strandat 1883.464 kb on + strandat 1883.466 kb on + strandat 1883.631 kb on + strand, within CCNA_01756at 1883.636 kb on + strand, within CCNA_01756at 1883.676 kb on - strandat 1883.726 kb on - strandat 1883.738 kb on + strandat 1883.943 kb on - strand, within CCNA_01757at 1884.027 kb on - strand, within CCNA_01757at 1884.037 kb on - strand, within CCNA_01757at 1884.357 kb on - strand, within CCNA_01757at 1884.383 kb on - strand, within CCNA_01757at 1884.556 kb on + strandat 1884.556 kb on + strandat 1884.586 kb on - strandat 1884.598 kb on - strandat 1884.598 kb on - strandat 1884.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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1,882,734 - CCNA_01755 0.57 +1.0
1,882,744 - CCNA_01755 0.58 +0.3
1,882,774 - CCNA_01755 0.60 +0.4
1,882,791 + CCNA_01755 0.61 +0.2
1,882,857 + CCNA_01755 0.65 +0.8
1,882,875 - CCNA_01755 0.66 +0.8
1,882,911 + CCNA_01755 0.68 -0.4
1,882,911 + CCNA_01755 0.68 +1.0
1,882,919 - CCNA_01755 0.69 -1.0
1,882,921 + CCNA_01755 0.69 +2.0
1,883,012 - CCNA_01755 0.74 -0.4
1,883,039 - CCNA_01755 0.76 -1.0
1,883,039 - CCNA_01755 0.76 -0.3
1,883,099 + CCNA_01755 0.79 -0.9
1,883,111 - CCNA_01755 0.80 +1.0
1,883,192 - CCNA_01755 0.85 -1.6
1,883,216 - CCNA_01755 0.87 -0.3
1,883,226 + CCNA_01755 0.87 -0.9
1,883,234 - CCNA_01755 0.88 +1.0
1,883,282 + -1.1
1,883,288 - -2.7
1,883,298 - -0.2
1,883,318 + -0.8
1,883,326 - -0.8
1,883,369 + -1.2
1,883,381 + -1.7
1,883,384 - +0.6
1,883,434 - +0.2
1,883,437 + +0.6
1,883,440 - -0.4
1,883,445 - +0.4
1,883,445 - +0.6
1,883,464 + +0.1
1,883,466 + -1.7
1,883,631 + CCNA_01756 0.80 +2.0
1,883,636 + CCNA_01756 0.84 +0.8
1,883,676 - +0.5
1,883,726 - +1.1
1,883,738 + -0.2
1,883,943 - CCNA_01757 0.27 +0.6
1,884,027 - CCNA_01757 0.37 +1.6
1,884,037 - CCNA_01757 0.38 +1.6
1,884,357 - CCNA_01757 0.77 +2.6
1,884,383 - CCNA_01757 0.80 +2.6
1,884,556 + +0.2
1,884,556 + -0.4
1,884,586 - +0.7
1,884,598 - +0.3
1,884,598 - +0.2
1,884,598 - -0.6

Or see this region's nucleotide sequence