Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01530

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
1,636,841	-		CCNA_01528	0.59	-0.3
1,636,846	-		CCNA_01528	0.59	-0.9
1,636,871	+		CCNA_01528	0.62	+0.9
1,636,874	-		CCNA_01528	0.63	-1.0
1,636,878	+		CCNA_01528	0.63	+0.8
1,636,879	+		CCNA_01528	0.63	+0.8
1,636,943	-		CCNA_01528	0.71	-0.0
1,636,994	-		CCNA_01528	0.77	-0.0
1,636,998	+		CCNA_01528	0.78	+1.4
1,636,998	+		CCNA_01528	0.78	+0.7
1,636,998	+		CCNA_01528	0.78	+1.1
1,636,998	+		CCNA_01528	0.78	+0.9
1,636,998	+		CCNA_01528	0.78	+1.2
1,636,998	+		CCNA_01528	0.78	+0.8
1,637,006	-		CCNA_01528	0.79	+1.3
1,637,006	-		CCNA_01528	0.79	-0.6
1,637,019	+		CCNA_01528	0.80	+1.0
1,637,019	+		CCNA_01528	0.80	+1.3
1,637,019	+		CCNA_01528	0.80	+0.9
1,637,027	-		CCNA_01528	0.81	+2.5
1,637,027	-		CCNA_01528	0.81	+0.6
1,637,029	+		CCNA_01528	0.82	+0.8
1,637,040	+		CCNA_01528	0.83	+1.0
1,637,048	-		CCNA_01528	0.84	-0.8
1,637,052	-		CCNA_01528	0.84	+1.0
1,637,083	-		CCNA_01528	0.88	+0.1
1,637,101	+				+1.2
1,637,171	+				+0.4
1,637,200	+				+1.1
1,637,222	+				+0.3
1,637,235	+				+1.2
1,637,298	+				-0.2
1,637,298	+				+0.6
1,637,321	+				+1.0
1,637,365	-		CCNA_01529	0.20	+0.5
1,637,365	-		CCNA_01529	0.20	+2.0
1,637,365	-		CCNA_01529	0.20	-0.8
1,637,374	+		CCNA_01529	0.22	+1.3
1,637,410	+		CCNA_01529	0.32	-0.0
1,637,427	+		CCNA_01529	0.36	+2.3
1,637,427	+		CCNA_01529	0.36	-0.1
1,637,435	-		CCNA_01529	0.38	-0.3
1,637,435	-		CCNA_01529	0.38	+1.0
1,637,458	+		CCNA_01529	0.45	+0.4
1,637,480	+		CCNA_01529	0.51	+0.7
1,637,480	+		CCNA_01529	0.51	+0.4
1,637,488	-		CCNA_01529	0.53	-1.4
1,637,539	+		CCNA_01529	0.67	+0.4
1,637,539	+		CCNA_01529	0.67	+0.6
1,637,541	+		CCNA_01529	0.67	+0.3
1,637,541	+		CCNA_01529	0.67	+0.2
1,637,541	+		CCNA_01529	0.67	+1.2
1,637,547	-		CCNA_01529	0.69	+0.2
1,637,581	-		CCNA_01529	0.78	-0.8
1,637,618	+		CCNA_01529	0.88	+0.9
1,637,623	+				-0.5
1,637,623	+		CCNA_01529	0.89	+0.7
1,637,623	+		CCNA_01529	0.89	+1.2
1,637,631	-				-1.6
1,637,655	+				+0.9
1,637,656	+				+0.4
1,637,656	+				+1.9
1,637,656	+				-0.2
1,637,656	+				+2.5
1,637,656	+				-0.6
1,637,664	-				-0.5
1,637,664	-				-1.0
1,637,664	-				-0.3
1,637,696	-				+0.5
1,637,724	-				-0.9
1,637,732	+				-0.9
1,637,745	-				+0.5
1,637,827	+				+0.8
1,637,885	+				+1.0
1,637,922	+				+1.2
1,637,922	+				+1.2
1,637,931	-		CCNA_01530	0.11	-1.3
1,637,943	+		CCNA_01530	0.12	+1.3
1,637,961	+		CCNA_01530	0.14	+1.4
1,637,961	+		CCNA_01530	0.14	+1.4
1,637,969	-		CCNA_01530	0.15	-0.4
1,637,969	-		CCNA_01530	0.15	-1.4
1,637,974	-		CCNA_01530	0.16	-0.0
1,638,000	-		CCNA_01530	0.19	-0.6
1,638,026	-		CCNA_01530	0.22	-0.1
1,638,028	+		CCNA_01530	0.22	+1.0
1,638,038	-		CCNA_01530	0.24	+1.6
1,638,038	-		CCNA_01530	0.24	-0.4
1,638,066	+		CCNA_01530	0.27	+1.1
1,638,092	-		CCNA_01530	0.30	-0.6
1,638,103	+		CCNA_01530	0.31	+1.0
1,638,111	-		CCNA_01530	0.32	-0.0
1,638,140	+		CCNA_01530	0.36	+1.0
1,638,152	+		CCNA_01530	0.37	+0.9
1,638,152	+		CCNA_01530	0.37	+0.9
1,638,152	+		CCNA_01530	0.37	+1.0
1,638,152	+		CCNA_01530	0.37	+1.3
1,638,164	+		CCNA_01530	0.39	+0.4
1,638,170	+		CCNA_01530	0.39	+0.6
1,638,185	+		CCNA_01530	0.41	+1.5
1,638,185	+		CCNA_01530	0.41	+2.1
1,638,185	+		CCNA_01530	0.41	-0.4
1,638,192	+		CCNA_01530	0.42	+1.6
1,638,193	-		CCNA_01530	0.42	+3.6
1,638,193	-		CCNA_01530	0.42	-1.1
1,638,193	-		CCNA_01530	0.42	-0.6
1,638,214	-		CCNA_01530	0.45	+1.4
1,638,231	+		CCNA_01530	0.47	+0.8
1,638,239	-		CCNA_01530	0.48	-1.5
1,638,241	+		CCNA_01530	0.48	+1.2
1,638,241	+		CCNA_01530	0.48	+1.4
1,638,241	+		CCNA_01530	0.48	+1.1
1,638,281	-		CCNA_01530	0.53	-1.4
1,638,315	+		CCNA_01530	0.57	+0.9
1,638,316	+		CCNA_01530	0.57	+1.7
1,638,318	-		CCNA_01530	0.57	+1.6
1,638,322	-		CCNA_01530	0.57	+1.8
1,638,322	-		CCNA_01530	0.57	+0.2
1,638,324	-		CCNA_01530	0.58	+0.6
1,638,325	+		CCNA_01530	0.58	+0.9
1,638,350	+		CCNA_01530	0.61	+1.5
1,638,350	+		CCNA_01530	0.61	+0.4
1,638,357	+		CCNA_01530	0.62	+1.3
1,638,378	+		CCNA_01530	0.64	+1.2
1,638,416	+		CCNA_01530	0.69	+1.1
1,638,426	+		CCNA_01530	0.70	+1.1
1,638,428	+		CCNA_01530	0.70	+1.0
1,638,429	-		CCNA_01530	0.70	+2.0
1,638,434	-		CCNA_01530	0.71	+1.6
1,638,458	+		CCNA_01530	0.74	+1.3
1,638,489	+		CCNA_01530	0.77	+1.0
1,638,489	+		CCNA_01530	0.77	+1.3
1,638,509	+		CCNA_01530	0.80	+1.2
1,638,509	+		CCNA_01530	0.80	+1.3
1,638,517	-		CCNA_01530	0.81	-1.1
1,638,517	-		CCNA_01530	0.81	-1.6
1,638,521	+		CCNA_01530	0.81	+0.5
1,638,522	+		CCNA_01530	0.81	+1.3
1,638,538	+		CCNA_01530	0.83	+1.3
1,638,566	+		CCNA_01530	0.87	+1.3
1,638,578	+		CCNA_01530	0.88	-0.3
1,638,578	+		CCNA_01530	0.88	+1.0
1,638,578	+		CCNA_01530	0.88	+1.5
1,638,586	-		CCNA_01530	0.89	+1.2
1,638,613	+				+1.4
1,638,618	+				+1.2
1,638,621	-				+0.9
1,638,621	-				+0.3
1,638,631	-				-1.5
1,638,662	+				+1.5
1,638,662	+				+1.7
1,638,662	+				+1.2
1,638,670	-				+0.7
1,638,670	-				-1.1
1,638,678	+				+0.9
1,638,678	+				+1.1
1,638,686	-				+1.0
1,638,700	+				+0.6
1,638,703	-				-0.8
1,638,708	-				-0.8
1,638,739	+				+1.0
1,638,739	+				+0.6
1,638,744	+				+1.2
1,638,812	+		CCNA_01531	0.12	+1.1
1,638,839	+		CCNA_01531	0.17	-0.3
1,638,839	+		CCNA_01531	0.17	-0.1
1,638,847	-		CCNA_01531	0.19	-0.3
1,638,863	+		CCNA_01531	0.22	-0.2
1,638,868	+		CCNA_01531	0.23	+0.3
1,638,929	+		CCNA_01531	0.34	-0.1
1,638,930	+		CCNA_01531	0.34	-0.2
1,638,953	+		CCNA_01531	0.38	+0.5
1,638,961	-		CCNA_01531	0.39	+1.5
1,639,042	+		CCNA_01531	0.54	+0.2
1,639,042	+		CCNA_01531	0.54	-0.8
1,639,042	+		CCNA_01531	0.54	-0.5
1,639,042	+		CCNA_01531	0.54	-0.7
1,639,070	+		CCNA_01531	0.59	+0.4
1,639,075	+		CCNA_01531	0.60	+0.2
1,639,076	+		CCNA_01531	0.60	+0.8
1,639,099	+		CCNA_01531	0.64	-0.7
1,639,099	+		CCNA_01531	0.64	+0.1
1,639,121	+		CCNA_01531	0.68	-2.3
1,639,178	+		CCNA_01531	0.78	-0.0
1,639,178	+		CCNA_01531	0.78	-0.1
1,639,203	+		CCNA_01531	0.83	-0.3
1,639,213	+		CCNA_01531	0.85	+0.2
1,639,227	+		CCNA_01531	0.87	+0.7
1,639,235	-		CCNA_01531	0.89	+0.2
1,639,236	+		CCNA_01531	0.89	-0.1
1,639,236	+		CCNA_01531	0.89	+0.2
1,639,236	+		CCNA_01531	0.89	+0.6
1,639,244	-				+1.6
1,639,244	-				+2.6
1,639,246	+				+0.7
1,639,254	-				+1.6
1,639,276	-				-0.8
1,639,278	-				-0.0
1,639,282	+				+1.1
1,639,282	+				+0.7
1,639,282	+				+1.1
1,639,303	+				+1.0
1,639,303	+				+1.0
1,639,330	+				+1.3
1,639,336	+				+1.2
1,639,336	+				+1.2
1,639,336	+				+1.4
1,639,337	+				+1.3
1,639,337	+				+1.5
1,639,344	-				+0.6
1,639,344	-				+0.2
1,639,344	-				+0.6
1,639,345	-				-0.6
1,639,371	-				-0.7
1,639,371	-				-0.0
1,639,371	-				-0.4
1,639,403	+				+0.7
1,639,408	+				+1.3
1,639,416	-				-1.4
1,639,418	+				+0.4
1,639,428	+				+0.6
1,639,428	+				+1.6
1,639,430	+				+0.1
1,639,475	+				+0.5
1,639,483	-				+0.2
1,639,483	-				-0.0
1,639,504	+				+0.4
1,639,506	-				+0.4
1,639,516	-				+0.2
1,639,516	-				+0.7
1,639,538	+				+1.3
1,639,538	+				+0.4
1,639,546	-				+0.2
1,639,556	-				-0.1
1,639,556	-				+0.2
1,639,558	+				+1.0
1,639,578	+				+0.3
1,639,586	-				-2.1
1,639,636	-				-0.6
1,639,644	-				+0.1
1,639,644	-				-0.4
1,639,655	-				+0.5
1,639,656	+				-0.3