Experiment: PYE 0.5x 30C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01321 and CCNA_01322 are separated by 3 nucleotides CCNA_01322 and CCNA_01323 are separated by 10 nucleotides CCNA_01323 and CCNA_01324 are separated by 3 nucleotides CCNA_01324 and CCNA_01325 are separated by 172 nucleotides CCNA_01325 and CCNA_01326 are separated by 219 nucleotides
CCNA_01321: CCNA_01321 - LSU ribosomal protein L6P, at 1,438,523 to 1,439,056
_01321
CCNA_01322: CCNA_01322 - LSU ribosomal protein L18P, at 1,439,060 to 1,439,410
_01322
CCNA_01323: CCNA_01323 - SSU ribosomal protein S5P, at 1,439,421 to 1,440,026
_01323
CCNA_01324: CCNA_01324 - LSU ribosomal protein L30P, at 1,440,030 to 1,440,215
_01324
CCNA_01325: CCNA_01325 - LSU ribosomal protein L15P, at 1,440,388 to 1,440,873
_01325
CCNA_01326: CCNA_01326 - protein translocase subunit secY, at 1,441,093 to 1,442,448
_01326
Position (kb) 1440
1441 Strain fitness (log2 ratio) -1
0
1 at 1440.117 kb on + strand, within CCNA_01324 at 1440.117 kb on + strand, within CCNA_01324 at 1440.137 kb on + strand, within CCNA_01324 at 1440.186 kb on + strand, within CCNA_01324 at 1440.186 kb on + strand, within CCNA_01324 at 1440.868 kb on + strand at 1440.875 kb on + strand at 1440.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days remove 1,440,117 + CCNA_01324 0.47 +1.4 1,440,117 + CCNA_01324 0.47 +1.0 1,440,137 + CCNA_01324 0.58 +1.3 1,440,186 + CCNA_01324 0.84 +0.6 1,440,186 + CCNA_01324 0.84 -0.0 1,440,868 + -0.3 1,440,875 + +1.4 1,440,992 + -1.3
Or see this region's nucleotide sequence