Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01186

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01184 and CCNA_01185 are separated by 5 nucleotidesCCNA_01185 and CCNA_01186 are separated by 261 nucleotidesCCNA_01186 and CCNA_01187 are separated by 172 nucleotidesCCNA_01187 and CCNA_01188 overlap by 4 nucleotides CCNA_01184: CCNA_01184 - MutT/nudix family hydrolase, at 1,303,641 to 1,304,087 _01184 CCNA_01185: CCNA_01185 - hypothetical protein, at 1,304,093 to 1,304,443 _01185 CCNA_01186: CCNA_01186 - hypothetical protein, at 1,304,705 to 1,305,016 _01186 CCNA_01187: CCNA_01187 - RNA polymerase ECF-type sigma factor, at 1,305,189 to 1,305,740 _01187 CCNA_01188: CCNA_01188 - FecR family protein, at 1,305,737 to 1,306,660 _01188 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2at 1303.707 kb on + strand, within CCNA_01184at 1303.707 kb on + strand, within CCNA_01184at 1303.707 kb on + strand, within CCNA_01184at 1303.707 kb on + strandat 1303.707 kb on + strand, within CCNA_01184at 1303.707 kb on + strand, within CCNA_01184at 1303.715 kb on - strand, within CCNA_01184at 1303.717 kb on + strand, within CCNA_01184at 1303.722 kb on + strand, within CCNA_01184at 1303.725 kb on - strand, within CCNA_01184at 1303.731 kb on + strand, within CCNA_01184at 1303.732 kb on + strand, within CCNA_01184at 1303.754 kb on + strand, within CCNA_01184at 1303.759 kb on - strandat 1303.767 kb on - strand, within CCNA_01184at 1303.768 kb on + strand, within CCNA_01184at 1303.776 kb on - strand, within CCNA_01184at 1303.882 kb on - strand, within CCNA_01184at 1303.885 kb on + strand, within CCNA_01184at 1303.896 kb on + strand, within CCNA_01184at 1303.954 kb on + strand, within CCNA_01184at 1303.960 kb on - strand, within CCNA_01184at 1303.962 kb on - strand, within CCNA_01184at 1303.973 kb on + strand, within CCNA_01184at 1303.973 kb on + strand, within CCNA_01184at 1303.981 kb on - strandat 1303.988 kb on - strand, within CCNA_01184at 1304.000 kb on + strand, within CCNA_01184at 1304.000 kb on + strand, within CCNA_01184at 1304.005 kb on + strand, within CCNA_01184at 1304.005 kb on + strand, within CCNA_01184at 1304.008 kb on - strand, within CCNA_01184at 1304.013 kb on - strand, within CCNA_01184at 1304.013 kb on - strand, within CCNA_01184at 1304.013 kb on - strand, within CCNA_01184at 1304.026 kb on + strand, within CCNA_01184at 1304.036 kb on + strand, within CCNA_01184at 1304.036 kb on + strand, within CCNA_01184at 1304.046 kb on + strandat 1304.059 kb on - strandat 1304.080 kb on - strandat 1304.082 kb on + strandat 1304.136 kb on + strand, within CCNA_01185at 1304.145 kb on - strand, within CCNA_01185at 1304.148 kb on + strand, within CCNA_01185at 1304.171 kb on + strand, within CCNA_01185at 1304.171 kb on + strand, within CCNA_01185at 1304.202 kb on - strand, within CCNA_01185at 1304.212 kb on - strand, within CCNA_01185at 1304.229 kb on + strand, within CCNA_01185at 1304.229 kb on + strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.280 kb on - strand, within CCNA_01185at 1304.296 kb on + strand, within CCNA_01185at 1304.319 kb on + strand, within CCNA_01185at 1304.319 kb on + strand, within CCNA_01185at 1304.327 kb on - strand, within CCNA_01185at 1304.399 kb on + strand, within CCNA_01185at 1304.399 kb on + strand, within CCNA_01185at 1304.404 kb on + strand, within CCNA_01185at 1304.407 kb on - strand, within CCNA_01185at 1304.444 kb on + strandat 1304.452 kb on - strandat 1304.492 kb on - strandat 1304.585 kb on + strandat 1304.653 kb on + strandat 1304.653 kb on + strandat 1304.684 kb on + strandat 1304.693 kb on + strandat 1304.721 kb on + strandat 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.850 kb on - strand, within CCNA_01186at 1304.850 kb on - strand, within CCNA_01186at 1304.854 kb on + strand, within CCNA_01186at 1304.884 kb on - strand, within CCNA_01186at 1304.886 kb on + strand, within CCNA_01186at 1304.912 kb on - strand, within CCNA_01186at 1305.052 kb on + strandat 1305.057 kb on + strandat 1305.070 kb on + strandat 1305.090 kb on + strandat 1305.118 kb on + strandat 1305.126 kb on - strandat 1305.164 kb on + strandat 1305.181 kb on + strandat 1305.181 kb on + strandat 1305.181 kb on + strandat 1305.189 kb on - strandat 1305.206 kb on + strandat 1305.218 kb on + strandat 1305.234 kb on - strandat 1305.241 kb on - strandat 1305.271 kb on + strand, within CCNA_01187at 1305.271 kb on + strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.303 kb on - strand, within CCNA_01187at 1305.303 kb on - strand, within CCNA_01187at 1305.315 kb on + strand, within CCNA_01187at 1305.323 kb on - strand, within CCNA_01187at 1305.327 kb on + strand, within CCNA_01187at 1305.345 kb on - strand, within CCNA_01187at 1305.347 kb on + strand, within CCNA_01187at 1305.348 kb on + strand, within CCNA_01187at 1305.353 kb on + strand, within CCNA_01187at 1305.355 kb on - strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.373 kb on - strand, within CCNA_01187at 1305.373 kb on - strand, within CCNA_01187at 1305.395 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.474 kb on + strand, within CCNA_01187at 1305.487 kb on - strand, within CCNA_01187at 1305.549 kb on - strand, within CCNA_01187at 1305.553 kb on - strand, within CCNA_01187at 1305.579 kb on + strand, within CCNA_01187at 1305.630 kb on + strand, within CCNA_01187at 1305.630 kb on + strand, within CCNA_01187at 1305.631 kb on + strand, within CCNA_01187at 1305.723 kb on + strandat 1305.734 kb on + strandat 1305.761 kb on + strandat 1305.773 kb on + strandat 1305.799 kb on + strandat 1305.856 kb on + strand, within CCNA_01188at 1305.857 kb on + strand, within CCNA_01188at 1305.876 kb on + strand, within CCNA_01188at 1305.969 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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1,303,707 + CCNA_01184 0.15 +0.3
1,303,707 + CCNA_01184 0.15 +1.2
1,303,707 + CCNA_01184 0.15 +1.1
1,303,707 + +1.4
1,303,707 + CCNA_01184 0.15 +0.6
1,303,707 + CCNA_01184 0.15 +0.8
1,303,715 - CCNA_01184 0.17 -1.4
1,303,717 + CCNA_01184 0.17 +0.9
1,303,722 + CCNA_01184 0.18 +1.2
1,303,725 - CCNA_01184 0.19 -1.2
1,303,731 + CCNA_01184 0.20 +0.9
1,303,732 + CCNA_01184 0.20 +0.4
1,303,754 + CCNA_01184 0.25 +0.5
1,303,759 - +0.0
1,303,767 - CCNA_01184 0.28 +1.0
1,303,768 + CCNA_01184 0.28 +0.9
1,303,776 - CCNA_01184 0.30 +0.6
1,303,882 - CCNA_01184 0.54 -0.6
1,303,885 + CCNA_01184 0.55 +0.8
1,303,896 + CCNA_01184 0.57 +0.2
1,303,954 + CCNA_01184 0.70 +0.1
1,303,960 - CCNA_01184 0.71 -1.7
1,303,962 - CCNA_01184 0.72 -1.4
1,303,973 + CCNA_01184 0.74 +0.2
1,303,973 + CCNA_01184 0.74 -0.8
1,303,981 - +1.4
1,303,988 - CCNA_01184 0.78 -1.1
1,304,000 + CCNA_01184 0.80 +0.5
1,304,000 + CCNA_01184 0.80 +0.7
1,304,005 + CCNA_01184 0.81 +1.1
1,304,005 + CCNA_01184 0.81 +0.7
1,304,008 - CCNA_01184 0.82 +1.0
1,304,013 - CCNA_01184 0.83 +0.0
1,304,013 - CCNA_01184 0.83 +0.0
1,304,013 - CCNA_01184 0.83 -0.7
1,304,026 + CCNA_01184 0.86 +0.7
1,304,036 + CCNA_01184 0.88 +0.4
1,304,036 + CCNA_01184 0.88 +1.0
1,304,046 + -0.4
1,304,059 - -2.0
1,304,080 - -1.3
1,304,082 + -0.3
1,304,136 + CCNA_01185 0.12 +0.1
1,304,145 - CCNA_01185 0.15 +0.6
1,304,148 + CCNA_01185 0.16 -0.3
1,304,171 + CCNA_01185 0.22 -1.0
1,304,171 + CCNA_01185 0.22 -1.0
1,304,202 - CCNA_01185 0.31 -0.2
1,304,212 - CCNA_01185 0.34 -0.5
1,304,229 + CCNA_01185 0.39 -0.7
1,304,229 + CCNA_01185 0.39 +1.1
1,304,237 - CCNA_01185 0.41 -0.1
1,304,237 - CCNA_01185 0.41 -0.2
1,304,237 - CCNA_01185 0.41 -0.2
1,304,280 - CCNA_01185 0.53 -1.1
1,304,296 + CCNA_01185 0.58 +1.4
1,304,319 + CCNA_01185 0.64 +0.8
1,304,319 + CCNA_01185 0.64 +0.8
1,304,327 - CCNA_01185 0.67 -0.1
1,304,399 + CCNA_01185 0.87 -0.9
1,304,399 + CCNA_01185 0.87 -0.2
1,304,404 + CCNA_01185 0.89 -0.5
1,304,407 - CCNA_01185 0.89 +0.8
1,304,444 + +2.4
1,304,452 - +0.6
1,304,492 - +0.0
1,304,585 + -0.6
1,304,653 + +0.8
1,304,653 + +0.0
1,304,684 + +1.8
1,304,693 + +1.0
1,304,721 + +0.9
1,304,842 + CCNA_01186 0.44 +0.1
1,304,842 + CCNA_01186 0.44 +1.2
1,304,842 + CCNA_01186 0.44 +1.2
1,304,842 + CCNA_01186 0.44 +0.9
1,304,850 - CCNA_01186 0.46 +0.8
1,304,850 - CCNA_01186 0.46 +2.4
1,304,854 + CCNA_01186 0.48 +1.3
1,304,884 - CCNA_01186 0.57 +0.4
1,304,886 + CCNA_01186 0.58 +0.7
1,304,912 - CCNA_01186 0.66 +1.0
1,305,052 + +1.4
1,305,057 + +0.7
1,305,070 + -2.3
1,305,090 + +1.4
1,305,118 + -1.0
1,305,126 - -0.8
1,305,164 + +1.8
1,305,181 + -0.3
1,305,181 + -0.6
1,305,181 + +1.2
1,305,189 - -0.4
1,305,206 + -1.0
1,305,218 + +0.3
1,305,234 - -0.4
1,305,241 - +0.2
1,305,271 + CCNA_01187 0.15 +2.4
1,305,271 + CCNA_01187 0.15 -0.9
1,305,279 - CCNA_01187 0.16 -1.4
1,305,279 - CCNA_01187 0.16 -0.2
1,305,279 - CCNA_01187 0.16 -0.3
1,305,303 - CCNA_01187 0.21 +0.0
1,305,303 - CCNA_01187 0.21 +0.6
1,305,315 + CCNA_01187 0.23 -0.3
1,305,323 - CCNA_01187 0.24 +0.8
1,305,327 + CCNA_01187 0.25 -0.6
1,305,345 - CCNA_01187 0.28 +1.4
1,305,347 + CCNA_01187 0.29 -0.8
1,305,348 + CCNA_01187 0.29 -1.4
1,305,353 + CCNA_01187 0.30 -0.8
1,305,355 - CCNA_01187 0.30 -1.2
1,305,365 + CCNA_01187 0.32 +0.2
1,305,365 + CCNA_01187 0.32 +0.5
1,305,365 + CCNA_01187 0.32 -0.9
1,305,365 + CCNA_01187 0.32 +0.3
1,305,365 + CCNA_01187 0.32 -1.2
1,305,365 + CCNA_01187 0.32 -0.1
1,305,373 - CCNA_01187 0.33 +1.4
1,305,373 - CCNA_01187 0.33 -0.3
1,305,395 + CCNA_01187 0.37 -1.2
1,305,409 + CCNA_01187 0.40 +0.4
1,305,409 + CCNA_01187 0.40 +0.3
1,305,409 + CCNA_01187 0.40 -0.4
1,305,474 + CCNA_01187 0.52 -1.8
1,305,487 - CCNA_01187 0.54 -0.3
1,305,549 - CCNA_01187 0.65 -0.4
1,305,553 - CCNA_01187 0.66 +0.0
1,305,579 + CCNA_01187 0.71 -0.1
1,305,630 + CCNA_01187 0.80 -0.3
1,305,630 + CCNA_01187 0.80 +0.0
1,305,631 + CCNA_01187 0.80 +0.1
1,305,723 + +0.2
1,305,734 + +0.2
1,305,761 + +1.0
1,305,773 + +0.5
1,305,799 + +0.8
1,305,856 + CCNA_01188 0.13 -0.8
1,305,857 + CCNA_01188 0.13 +0.4
1,305,876 + CCNA_01188 0.15 +0.2
1,305,969 + CCNA_01188 0.25 +0.6
1,305,971 + CCNA_01188 0.25 -1.4
1,305,971 + CCNA_01188 0.25 +0.3
1,305,971 + CCNA_01188 0.25 +0.6
1,305,971 + CCNA_01188 0.25 -1.0
1,305,971 + CCNA_01188 0.25 +0.8

Or see this region's nucleotide sequence