Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01181

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
1,300,291	+		CCNA_01180	0.59	+0.8
1,300,292	-		CCNA_01180	0.59	-2.0
1,300,292	-		CCNA_01180	0.59	-1.6
1,300,292	-		CCNA_01180	0.59	-0.5
1,300,299	-		CCNA_01180	0.59	+0.2
1,300,299	-		CCNA_01180	0.59	+0.3
1,300,315	+		CCNA_01180	0.60	-0.6
1,300,421	-		CCNA_01180	0.65	+1.4
1,300,445	-		CCNA_01180	0.66	+2.4
1,300,454	+		CCNA_01180	0.66	+0.0
1,300,504	-		CCNA_01180	0.69	-0.4
1,300,538	-		CCNA_01180	0.70	+0.8
1,300,567	+		CCNA_01180	0.72	+0.2
1,300,664	-		CCNA_01180	0.76	-1.1
1,300,676	+		CCNA_01180	0.77	+1.0
1,300,676	+		CCNA_01180	0.77	+1.4
1,300,676	+		CCNA_01180	0.77	-1.0
1,300,724	+		CCNA_01180	0.79	-2.3
1,300,732	-		CCNA_01180	0.79	-1.8
1,300,781	+		CCNA_01180	0.81	+0.8
1,300,781	+		CCNA_01180	0.81	-0.2
1,300,781	+		CCNA_01180	0.81	+0.4
1,300,786	+		CCNA_01180	0.82	-0.6
1,300,789	-		CCNA_01180	0.82	+0.9
1,300,795	+		CCNA_01180	0.82	-1.5
1,300,827	+		CCNA_01180	0.84	+0.0
1,300,835	-		CCNA_01180	0.84	+1.3
1,300,844	+		CCNA_01180	0.84	+0.7
1,300,844	+		CCNA_01180	0.84	-1.6
1,300,847	-		CCNA_01180	0.84	+0.2
1,300,860	+		CCNA_01180	0.85	-0.8
1,300,878	+		CCNA_01180	0.86	+0.4
1,300,894	+		CCNA_01180	0.87	-0.6
1,300,895	+		CCNA_01180	0.87	+0.0
1,300,900	+		CCNA_01180	0.87	+0.8
1,300,912	-		CCNA_01180	0.87	-2.3
1,300,913	-		CCNA_01180	0.87	-0.2
1,300,931	-		CCNA_01180	0.88	-1.0
1,300,961	-		CCNA_01180	0.90	+0.5
1,300,965	+		CCNA_01180	0.90	+1.4
1,300,967	-		CCNA_01180	0.90	+0.3
1,300,994	-				+0.8
1,300,997	+				+2.4
1,301,005	-				-0.9
1,301,006	-				+0.4
1,301,009	+				-0.2
1,301,011	-				-0.8
1,301,015	-				+0.0
1,301,039	-				-1.9
1,301,073	+				+0.8
1,301,094	+				-1.4
1,301,128	-				+0.7
1,301,155	+				+2.4
1,301,163	-				+0.3
1,301,163	-				-0.1
1,301,163	-				+0.8
1,301,171	-				+0.0
1,301,235	-				+0.9
1,301,252	-				+0.7
1,301,294	+				-0.4
1,301,294	+				+0.4
1,301,294	+				-2.5
1,301,302	-				+1.6
1,301,309	+				-0.2
1,301,309	+				+4.4
1,301,317	-				+1.1
1,301,342	-		CCNA_01181	0.12	+1.4
1,301,361	+		CCNA_01181	0.16	+1.0
1,301,375	+		CCNA_01181	0.18	+2.4
1,301,383	-		CCNA_01181	0.20	+1.2
1,301,383	-		CCNA_01181	0.20	+1.5
1,301,383	-		CCNA_01181	0.20	+1.4
1,301,407	-		CCNA_01181	0.25	+1.8
1,301,477	-		CCNA_01181	0.38	+1.6
1,301,522	-		CCNA_01181	0.46	+1.6
1,301,522	-		CCNA_01181	0.46	+1.7
1,301,522	-		CCNA_01181	0.46	+1.3
1,301,590	-		CCNA_01181	0.59	+1.1
1,301,596	-		CCNA_01181	0.61	+1.3
1,301,616	+		CCNA_01181	0.64	+0.9
1,301,643	-		CCNA_01181	0.70	+2.2
1,301,658	-		CCNA_01181	0.72	+1.3
1,301,740	+		CCNA_01181	0.88	+0.7
1,301,838	+				-1.5
1,301,838	+				-1.5
1,301,838	+				-1.3
1,301,838	+				+0.1
1,301,846	-				+0.7
1,301,846	-				+0.6
1,301,859	+				-0.0
1,301,893	+				-0.4
1,301,893	+				+0.8
1,301,906	-				-0.2
1,301,989	-				+0.8
1,301,990	+				-0.1
1,301,990	+				+0.3
1,301,990	+				+0.6
1,301,995	+				+0.5
1,302,077	+		CCNA_01182	0.14	-0.8
1,302,082	+		CCNA_01182	0.15	-0.0
1,302,136	-		CCNA_01182	0.24	+0.4
1,302,137	+		CCNA_01182	0.24	-1.1
1,302,137	+		CCNA_01182	0.24	+0.4
1,302,137	+		CCNA_01182	0.24	+0.4
1,302,138	-		CCNA_01182	0.24	+1.4
1,302,139	+		CCNA_01182	0.25	-1.2
1,302,145	-		CCNA_01182	0.26	+1.4
1,302,145	-		CCNA_01182	0.26	+1.4
1,302,145	-		CCNA_01182	0.26	-1.0
1,302,145	-		CCNA_01182	0.26	+0.8
1,302,145	-		CCNA_01182	0.26	+0.0
1,302,145	-		CCNA_01182	0.26	+0.4
1,302,145	-		CCNA_01182	0.26	-1.0
1,302,160	-		CCNA_01182	0.28	-0.2
1,302,180	-		CCNA_01182	0.31	+1.4
1,302,202	-		CCNA_01182	0.35	-2.0
1,302,231	+		CCNA_01182	0.40	-1.7
1,302,231	+		CCNA_01182	0.40	+1.6
1,302,231	+		CCNA_01182	0.40	+0.8
1,302,239	-		CCNA_01182	0.41	+2.4
1,302,244	-		CCNA_01182	0.42	-0.8
1,302,254	+		CCNA_01182	0.44	-1.0
1,302,262	-		CCNA_01182	0.45	+0.8
1,302,296	+		CCNA_01182	0.51	-1.0
1,302,296	-		CCNA_01182	0.51	+2.4
1,302,298	+		CCNA_01182	0.51	-3.0
1,302,298	+		CCNA_01182	0.51	-1.5
1,302,305	+		CCNA_01182	0.53	-0.3
1,302,306	-		CCNA_01182	0.53	+0.4
1,302,310	+		CCNA_01182	0.53	+0.6
1,302,340	+		CCNA_01182	0.58	-1.4
1,302,346	-		CCNA_01182	0.59	+0.8
1,302,346	-		CCNA_01182	0.59	-0.2
1,302,347	-		CCNA_01182	0.60	+2.4
1,302,366	+		CCNA_01182	0.63	+0.8
1,302,366	+		CCNA_01182	0.63	+0.2
1,302,374	-		CCNA_01182	0.64	+2.4
1,302,374	-		CCNA_01182	0.64	+0.4
1,302,374	-		CCNA_01182	0.64	-1.4
1,302,374	-		CCNA_01182	0.64	+1.2
1,302,412	+		CCNA_01182	0.71	-0.6
1,302,412	+		CCNA_01182	0.71	+0.8
1,302,412	+		CCNA_01182	0.71	-0.7
1,302,417	+		CCNA_01182	0.71	+1.4
1,302,420	-		CCNA_01182	0.72	+0.4
1,302,422	-		CCNA_01182	0.72	+0.4
1,302,432	-		CCNA_01182	0.74	-0.5
1,302,458	-		CCNA_01182	0.78	+2.4
1,302,485	+		CCNA_01182	0.83	+0.3
1,302,485	+		CCNA_01182	0.83	+0.2
1,302,485	+		CCNA_01182	0.83	-0.1
1,302,485	+		CCNA_01182	0.83	-0.5
1,302,485	+		CCNA_01182	0.83	+0.7
1,302,485	+		CCNA_01182	0.83	+1.0
1,302,485	+		CCNA_01182	0.83	+0.4
1,302,487	-		CCNA_01182	0.83	-1.0
1,302,493	-		CCNA_01182	0.84	+1.4
1,302,493	-		CCNA_01182	0.84	-0.4
1,302,493	-		CCNA_01182	0.84	-0.4
1,302,493	-		CCNA_01182	0.84	+1.4
1,302,493	-		CCNA_01182	0.84	-0.8
1,302,493	-		CCNA_01182	0.84	+2.4
1,302,493	-		CCNA_01182	0.84	+2.4
1,302,493	-		CCNA_01182	0.84	+0.8
1,302,493	-		CCNA_01182	0.84	+2.4
1,302,511	-		CCNA_01182	0.87	+2.4
1,302,521	+		CCNA_01182	0.89	-1.4
1,302,537	-				+0.8
1,302,550	+				+0.4
1,302,567	-				+0.8
1,302,602	-				+1.8
1,302,656	-				+2.4
1,302,676	+				+1.0
1,302,676	+				+2.4
1,302,684	-				+0.0
1,302,684	-				-1.5
1,302,684	-				+2.4
1,302,684	-				+0.8
1,302,686	-				-1.5
1,302,687	+				+0.6
1,302,704	-				-0.8
1,302,740	-		CCNA_01183	0.13	-0.2
1,302,759	+		CCNA_01183	0.15	-1.1