Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01155

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
1,257,888	+				+1.0
1,257,993	-		CCNA_01154	0.13	+2.4
1,258,014	-		CCNA_01154	0.16	-1.3
1,258,069	+		CCNA_01154	0.24	-0.2
1,258,082	+		CCNA_01154	0.26	-0.2
1,258,091	-		CCNA_01154	0.27	+0.4
1,258,098	+		CCNA_01154	0.28	-0.5
1,258,126	+		CCNA_01154	0.32	+0.2
1,258,126	+		CCNA_01154	0.32	-0.0
1,258,126	+		CCNA_01154	0.32	+0.4
1,258,134	-		CCNA_01154	0.34	-2.0
1,258,138	+		CCNA_01154	0.34	-0.3
1,258,146	-		CCNA_01154	0.35	+1.4
1,258,146	-		CCNA_01154	0.35	+2.4
1,258,146	-		CCNA_01154	0.35	+1.4
1,258,173	+		CCNA_01154	0.39	+0.6
1,258,182	-		CCNA_01154	0.41	-1.6
1,258,182	-		CCNA_01154	0.41	+0.4
1,258,274	+		CCNA_01154	0.54	-0.7
1,258,309	+		CCNA_01154	0.59	+0.2
1,258,317	-		CCNA_01154	0.60	+1.8
1,258,370	+		CCNA_01154	0.68	-0.2
1,258,370	+		CCNA_01154	0.68	-0.4
1,258,454	+		CCNA_01154	0.80	+0.4
1,258,495	+		CCNA_01154	0.86	-1.2
1,258,544	+				-0.4
1,258,558	+				-0.2
1,258,561	-				-2.3
1,258,564	+				-2.2
1,258,565	-				-0.8
1,258,566	-				-0.2
1,258,586	+				-1.6
1,258,594	-				-0.4
1,258,595	+				+0.2
1,258,610	+				-0.2
1,258,610	+				-2.2
1,258,618	-				-2.1
1,258,623	-				+1.4
1,258,680	+				-1.2
1,258,688	-				-1.8
1,258,715	+				-0.7
1,258,723	-				-0.2
1,258,723	-				+0.4
1,258,845	-				+2.4
1,258,886	-				+0.0
1,258,948	+				+1.6
1,258,963	-				-0.2
1,258,993	+				+2.0
1,258,993	+				+1.3
1,258,993	+				+1.4
1,259,041	+				+2.0
1,259,044	-				-0.7
1,259,054	-				+0.6
1,259,054	-				-1.0
1,259,054	-				+0.9
1,259,054	-				+0.9
1,259,054	-				+1.3
1,259,054	-				+1.8
1,259,060	-				+0.8
1,259,065	+				+1.6
1,259,070	+				-2.0
1,259,088	-				+0.1
1,259,094	+				+1.0
1,259,100	-				-0.3
1,259,175	-		CCNA_01155	0.10	+1.0
1,259,192	+		CCNA_01155	0.11	+1.0
1,259,241	+		CCNA_01155	0.12	+1.4
1,259,294	+		CCNA_01155	0.14	+1.8
1,259,294	+		CCNA_01155	0.14	+0.8
1,259,301	-		CCNA_01155	0.14	-0.6
1,259,302	-		CCNA_01155	0.14	+1.0
1,259,314	-		CCNA_01155	0.15	+0.9
1,259,364	-		CCNA_01155	0.17	-0.2
1,259,398	-		CCNA_01155	0.18	-0.1
1,259,415	-		CCNA_01155	0.18	+1.3
1,259,415	-		CCNA_01155	0.18	-0.4
1,259,419	+		CCNA_01155	0.18	+1.8
1,259,419	+		CCNA_01155	0.18	+1.6
1,259,424	+		CCNA_01155	0.19	+1.1
1,259,449	+		CCNA_01155	0.19	+0.7
1,259,449	+				+0.0
1,259,449	+		CCNA_01155	0.19	+1.1
1,259,457	-				+1.4
1,259,457	-		CCNA_01155	0.20	-0.2
1,259,457	-				+0.4
1,259,463	+		CCNA_01155	0.20	+0.5
1,259,468	+		CCNA_01155	0.20	+0.4
1,259,522	-		CCNA_01155	0.22	+1.4
1,259,572	-		CCNA_01155	0.24	+1.7
1,259,586	+		CCNA_01155	0.24	+1.0
1,259,643	+		CCNA_01155	0.26	+1.0
1,259,651	-		CCNA_01155	0.26	+0.4
1,259,666	+		CCNA_01155	0.27	+0.0
1,259,698	-		CCNA_01155	0.28	+0.4
1,259,710	-		CCNA_01155	0.28	+1.0
1,259,723	+		CCNA_01155	0.29	+0.2
1,259,845	-		CCNA_01155	0.33	+0.6
1,259,847	+		CCNA_01155	0.33	+1.0
1,259,855	-		CCNA_01155	0.33	-1.3
1,259,855	-		CCNA_01155	0.33	+0.9
1,259,882	+		CCNA_01155	0.34	+0.6
1,259,882	+		CCNA_01155	0.34	+1.1
1,259,890	-		CCNA_01155	0.35	-1.1
1,259,890	-		CCNA_01155	0.35	-0.2
1,259,895	+		CCNA_01155	0.35	+1.7
1,259,895	+				+2.9
1,259,920	-		CCNA_01155	0.36	+1.8
1,259,947	-		CCNA_01155	0.36	+1.4
1,259,951	-		CCNA_01155	0.37	+2.4
1,259,966	-		CCNA_01155	0.37	+1.3
1,259,977	+		CCNA_01155	0.37	+1.6
1,259,984	-		CCNA_01155	0.38	+1.0
1,259,985	+		CCNA_01155	0.38	+1.5
1,259,999	+		CCNA_01155	0.38	+1.6
1,260,017	+		CCNA_01155	0.39	+1.1
1,260,017	+		CCNA_01155	0.39	+1.9
1,260,025	-		CCNA_01155	0.39	+0.4
1,260,052	+		CCNA_01155	0.40	+0.5
1,260,052	+		CCNA_01155	0.40	+1.2
1,260,052	+		CCNA_01155	0.40	+1.0
1,260,107	-		CCNA_01155	0.42	+2.4
1,260,119	+		CCNA_01155	0.42	+1.0
1,260,143	+		CCNA_01155	0.43	+1.8
1,260,151	-		CCNA_01155	0.43	+0.0
1,260,208	+		CCNA_01155	0.45	+1.7
1,260,215	+		CCNA_01155	0.46	+0.4
1,260,223	-		CCNA_01155	0.46	+0.4
1,260,225	+		CCNA_01155	0.46	+0.9
1,260,233	-		CCNA_01155	0.46	+1.4
1,260,236	+		CCNA_01155	0.46	+0.9
1,260,236	+		CCNA_01155	0.46	+0.7
1,260,241	+		CCNA_01155	0.46	-0.0
1,260,250	+		CCNA_01155	0.47	+1.9
1,260,259	+		CCNA_01155	0.47	+0.8
1,260,259	+		CCNA_01155	0.47	+1.1
1,260,328	+		CCNA_01155	0.49	+0.9
1,260,329	+		CCNA_01155	0.49	+1.2
1,260,329	+		CCNA_01155	0.49	+1.6
1,260,329	+		CCNA_01155	0.49	+0.9
1,260,329	+		CCNA_01155	0.49	+1.0
1,260,330	-		CCNA_01155	0.50	+0.0
1,260,330	-		CCNA_01155	0.50	-0.4
1,260,336	-		CCNA_01155	0.50	-0.4
1,260,337	-		CCNA_01155	0.50	+0.8
1,260,337	-		CCNA_01155	0.50	+1.4
1,260,355	+		CCNA_01155	0.50	+1.3
1,260,430	+		CCNA_01155	0.53	-1.7
1,260,477	-		CCNA_01155	0.55	+1.7
1,260,480	+		CCNA_01155	0.55	+1.7
1,260,515	+		CCNA_01155	0.56	+1.3
1,260,607	+		CCNA_01155	0.59	+1.0
1,260,607	-		CCNA_01155	0.59	+1.4
1,260,607	-		CCNA_01155	0.59	+1.4
1,260,609	+		CCNA_01155	0.59	+1.5
1,260,621	+		CCNA_01155	0.59	+1.2
1,260,625	+		CCNA_01155	0.60	+2.1
1,260,633	+		CCNA_01155	0.60	+1.3
1,260,664	+		CCNA_01155	0.61	+2.2
1,260,670	-		CCNA_01155	0.61	+2.4
1,260,672	+		CCNA_01155	0.61	+1.1
1,260,699	-		CCNA_01155	0.62	-0.8
1,260,699	-		CCNA_01155	0.62	+0.4
1,260,739	+		CCNA_01155	0.63	+1.3
1,260,765	+		CCNA_01155	0.64	+1.3
1,260,765	+		CCNA_01155	0.64	+0.3
1,260,765	+		CCNA_01155	0.64	+1.8
1,260,765	+		CCNA_01155	0.64	+1.3
1,260,773	-		CCNA_01155	0.65	+1.4
1,260,776	+		CCNA_01155	0.65	+1.1
1,260,823	+		CCNA_01155	0.66	+1.6
1,260,823	+		CCNA_01155	0.66	+1.8
1,260,826	-		CCNA_01155	0.66	-0.0
1,260,840	+		CCNA_01155	0.67	+1.2
1,260,850	+		CCNA_01155	0.67	+1.6
1,260,850	+		CCNA_01155	0.67	+1.5
1,260,858	-		CCNA_01155	0.68	+1.0
1,260,859	+		CCNA_01155	0.68	+1.6
1,260,859	+		CCNA_01155	0.68	+1.9
1,260,865	-		CCNA_01155	0.68	+0.4
1,260,867	-		CCNA_01155	0.68	+1.4
1,260,867	-		CCNA_01155	0.68	-0.2
1,260,867	-		CCNA_01155	0.68	+0.5
1,260,868	-		CCNA_01155	0.68	+0.6
1,260,882	+		CCNA_01155	0.68	+0.9
1,260,892	+		CCNA_01155	0.69	+1.3
1,260,892	+		CCNA_01155	0.69	+1.7
1,260,892	+		CCNA_01155	0.69	+2.0
1,260,892	+		CCNA_01155	0.69	+0.9
1,260,900	-		CCNA_01155	0.69	-1.3
1,260,937	+		CCNA_01155	0.70	+1.8
1,260,937	+		CCNA_01155	0.70	+2.0
1,260,994	+		CCNA_01155	0.72	+1.2
1,261,024	-		CCNA_01155	0.73	+0.4
1,261,063	+		CCNA_01155	0.75	+1.5
1,261,070	+		CCNA_01155	0.75	+2.0
1,261,070	+		CCNA_01155	0.75	+1.6
1,261,077	+		CCNA_01155	0.75	+1.5
1,261,078	-		CCNA_01155	0.75	+0.8
1,261,082	+		CCNA_01155	0.75	+0.9
1,261,085	-		CCNA_01155	0.75	+0.6
1,261,117	+		CCNA_01155	0.76	+1.4
1,261,197	-		CCNA_01155	0.79	+0.4
1,261,228	+		CCNA_01155	0.80	+1.8
1,261,256	+		CCNA_01155	0.81	+1.3
1,261,258	-		CCNA_01155	0.81	-0.2
1,261,340	-		CCNA_01155	0.84	+0.4
1,261,340	-		CCNA_01155	0.84	-0.4
1,261,348	+		CCNA_01155	0.84	+1.8
1,261,348	+		CCNA_01155	0.84	+1.1
1,261,348	+		CCNA_01155	0.84	+1.5
1,261,348	+		CCNA_01155	0.84	+1.6
1,261,356	-		CCNA_01155	0.84	+1.5
1,261,356	-		CCNA_01155	0.84	+0.9
1,261,363	+		CCNA_01155	0.85	-0.7
1,261,363	+		CCNA_01155	0.85	+1.9
1,261,368	-		CCNA_01155	0.85	+1.2
1,261,376	-		CCNA_01155	0.85	+2.0
1,261,455	+		CCNA_01155	0.88	+1.2
1,261,516	-		CCNA_01155	0.90	+0.8
1,261,516	-		CCNA_01155	0.90	+2.4
1,261,516	-		CCNA_01155	0.90	+0.4
1,261,583	+				+1.9
1,261,583	+				+1.4
1,261,591	-				-0.2
1,261,594	+				+2.0
1,261,594	+				+1.8
1,261,594	+				+1.9
1,261,614	-				+0.8
1,261,621	+				+1.8
1,261,653	+				+1.7
1,261,658	+				+2.0
1,261,658	+				+1.8
1,261,658	+				+2.1
1,261,661	-				-1.1
1,261,661	-				-0.6
1,261,666	-				+0.4
1,261,666	-				+1.4
1,261,687	-				+1.9
1,261,707	+				+2.0
1,261,721	+				+2.0
1,261,725	-				+0.4
1,261,792	+				+2.0
1,261,792	+				+1.8
1,261,804	+				+1.3
1,261,804	+				+2.0
1,261,804	+				+1.7
1,261,810	+				+1.7
1,261,812	-				+2.8
1,261,812	-				+2.4
1,261,812	-				-2.4
1,261,818	-				-0.4
1,261,824	+				+1.1
1,261,824	+				+1.9
1,261,957	+				-1.7
1,261,969	+		CCNA_01156	0.11	+0.5
1,261,972	+		CCNA_01156	0.11	+0.4
1,261,980	-		CCNA_01156	0.12	-1.7
1,262,003	-		CCNA_01156	0.15	-2.0
1,262,034	+		CCNA_01156	0.19	-0.8
1,262,037	-		CCNA_01156	0.19	+0.4
1,262,039	+		CCNA_01156	0.19	+0.8
1,262,058	+		CCNA_01156	0.22	+0.6
1,262,088	+		CCNA_01156	0.26	-0.2
1,262,102	-		CCNA_01156	0.27	+0.0
1,262,148	-		CCNA_01156	0.33	+1.5
1,262,150	-		CCNA_01156	0.34	-0.9
1,262,159	-		CCNA_01156	0.35	-1.1
1,262,164	-				-0.1
1,262,174	+		CCNA_01156	0.37	+0.4
1,262,192	-		CCNA_01156	0.39	-0.9
1,262,194	-		CCNA_01156	0.39	-0.9
1,262,201	+		CCNA_01156	0.40	-0.3
1,262,209	-		CCNA_01156	0.41	+0.8
1,262,221	-		CCNA_01156	0.43	-2.2
1,262,224	+		CCNA_01156	0.43	+0.4
1,262,248	+		CCNA_01156	0.46	-0.6
1,262,259	+		CCNA_01156	0.47	+1.0
1,262,307	-		CCNA_01156	0.54	-0.4
1,262,379	+		CCNA_01156	0.63	+0.5
1,262,396	+		CCNA_01156	0.65	+0.7
1,262,396	+		CCNA_01156	0.65	+0.3
1,262,396	+		CCNA_01156	0.65	+2.0
1,262,419	-		CCNA_01156	0.68	+0.8
1,262,435	+		CCNA_01156	0.70	-0.3
1,262,437	+		CCNA_01156	0.70	-0.9
1,262,484	+		CCNA_01156	0.76	-0.0
1,262,521	+		CCNA_01156	0.81	+0.4
1,262,529	-		CCNA_01156	0.82	-1.8
1,262,566	-		CCNA_01156	0.87	-0.4
1,262,569	+		CCNA_01156	0.87	+0.6
1,262,577	-		CCNA_01156	0.88	+0.4
1,262,590	+		CCNA_01156	0.90	-0.7
1,262,610	+				-0.0
1,262,610	+				+1.2
1,262,610	+				+0.3
1,262,610	+				+1.2
1,262,610	+				+0.1
1,262,618	-				+0.6
1,262,643	+				-0.8
1,262,662	-				+0.6
1,262,680	-				+0.0
1,262,685	+				-0.5
1,262,688	+				+0.5
1,262,716	-				-0.8
1,262,736	+				-1.1
1,262,736	+				+0.0
1,262,792	+				+0.6
1,262,804	+				+0.3
1,262,804	+				+0.7
1,262,804	+				+0.9
1,262,804	+				-1.0
1,262,804	+				+0.8
1,262,804	+				-0.8
1,262,804	+				+1.5
1,262,804	+				+0.2
1,262,804	+				+0.0
1,262,804	+				+2.6
1,262,804	+				+0.6
1,262,804	+				+0.8