Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01131

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01129 and CCNA_01130 are separated by 14 nucleotidesCCNA_01130 and CCNA_01131 are separated by 9 nucleotidesCCNA_01131 and CCNA_01132 are separated by 102 nucleotides CCNA_01129: CCNA_01129 - flagellar biosynthesis protein FliQ, at 1,233,504 to 1,233,770 _01129 CCNA_01130: CCNA_01130 - flagellar biosynthesis protein FliR, at 1,233,785 to 1,234,540 _01130 CCNA_01131: CCNA_01131 - flagellar biosynthesis protein FlhB, at 1,234,550 to 1,235,635 _01131 CCNA_01132: CCNA_01132 - sensory transduction histidine kinase/receiver protein CckA, at 1,235,738 to 1,237,813 _01132 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1233.550 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.558 kb on + strand, within CCNA_01129at 1233.558 kb on + strand, within CCNA_01129at 1233.564 kb on - strand, within CCNA_01129at 1233.612 kb on + strand, within CCNA_01129at 1233.617 kb on + strand, within CCNA_01129at 1233.625 kb on + strand, within CCNA_01129at 1233.653 kb on + strand, within CCNA_01129at 1233.653 kb on + strand, within CCNA_01129at 1233.661 kb on - strand, within CCNA_01129at 1233.781 kb on - strandat 1233.811 kb on + strandat 1233.819 kb on - strandat 1233.824 kb on + strandat 1233.841 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.861 kb on - strand, within CCNA_01130at 1233.883 kb on + strand, within CCNA_01130at 1233.927 kb on - strand, within CCNA_01130at 1233.933 kb on + strand, within CCNA_01130at 1233.947 kb on + strand, within CCNA_01130at 1233.952 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.976 kb on - strand, within CCNA_01130at 1233.977 kb on + strand, within CCNA_01130at 1234.005 kb on + strand, within CCNA_01130at 1234.013 kb on + strand, within CCNA_01130at 1234.021 kb on - strand, within CCNA_01130at 1234.021 kb on - strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.107 kb on + strand, within CCNA_01130at 1234.119 kb on + strand, within CCNA_01130at 1234.125 kb on - strand, within CCNA_01130at 1234.130 kb on - strand, within CCNA_01130at 1234.205 kb on - strand, within CCNA_01130at 1234.279 kb on - strand, within CCNA_01130at 1234.279 kb on - strand, within CCNA_01130at 1234.290 kb on + strand, within CCNA_01130at 1234.315 kb on + strand, within CCNA_01130at 1234.317 kb on + strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130at 1234.375 kb on - strand, within CCNA_01130at 1234.385 kb on + strand, within CCNA_01130at 1234.385 kb on + strand, within CCNA_01130at 1234.385 kb on + strand, within CCNA_01130at 1234.390 kb on + strand, within CCNA_01130at 1234.393 kb on - strand, within CCNA_01130at 1234.412 kb on + strand, within CCNA_01130at 1234.421 kb on + strand, within CCNA_01130at 1234.463 kb on + strand, within CCNA_01130at 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.520 kb on + strandat 1234.520 kb on + strandat 1234.520 kb on + strandat 1234.528 kb on - strandat 1234.544 kb on - strandat 1234.581 kb on + strandat 1234.595 kb on + strandat 1234.603 kb on + strandat 1234.603 kb on + strandat 1234.730 kb on + strand, within CCNA_01131at 1234.738 kb on - strand, within CCNA_01131at 1234.798 kb on + strand, within CCNA_01131at 1234.837 kb on + strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.870 kb on + strand, within CCNA_01131at 1234.894 kb on + strand, within CCNA_01131at 1234.897 kb on - strand, within CCNA_01131at 1234.912 kb on + strand, within CCNA_01131at 1234.932 kb on + strand, within CCNA_01131at 1234.942 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.957 kb on - strand, within CCNA_01131at 1234.957 kb on - strand, within CCNA_01131at 1234.977 kb on + strand, within CCNA_01131at 1234.980 kb on - strand, within CCNA_01131at 1234.981 kb on + strand, within CCNA_01131at 1235.050 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strandat 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.147 kb on - strand, within CCNA_01131at 1235.163 kb on + strand, within CCNA_01131at 1235.168 kb on + strand, within CCNA_01131at 1235.221 kb on - strand, within CCNA_01131at 1235.228 kb on - strand, within CCNA_01131at 1235.240 kb on - strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.251 kb on + strand, within CCNA_01131at 1235.290 kb on + strand, within CCNA_01131at 1235.332 kb on + strand, within CCNA_01131at 1235.365 kb on + strand, within CCNA_01131at 1235.370 kb on + strand, within CCNA_01131at 1235.385 kb on + strand, within CCNA_01131at 1235.394 kb on - strand, within CCNA_01131at 1235.455 kb on - strand, within CCNA_01131at 1235.516 kb on + strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.552 kb on + strandat 1235.586 kb on + strandat 1235.609 kb on + strandat 1235.656 kb on + strandat 1235.664 kb on - strandat 1235.723 kb on + strandat 1235.724 kb on + strandat 1235.758 kb on + strandat 1235.773 kb on - strandat 1235.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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1,233,550 + CCNA_01129 0.17 -1.9
1,233,556 + CCNA_01129 0.19 -1.0
1,233,556 + CCNA_01129 0.19 -3.1
1,233,556 + CCNA_01129 0.19 -0.6
1,233,556 + CCNA_01129 0.19 -3.3
1,233,556 + CCNA_01129 0.19 -0.6
1,233,558 + CCNA_01129 0.20 -1.0
1,233,558 + CCNA_01129 0.20 -1.9
1,233,564 - CCNA_01129 0.22 +0.0
1,233,612 + CCNA_01129 0.40 -0.4
1,233,617 + CCNA_01129 0.42 -1.5
1,233,625 + CCNA_01129 0.45 +0.4
1,233,653 + CCNA_01129 0.56 -2.5
1,233,653 + CCNA_01129 0.56 -1.4
1,233,661 - CCNA_01129 0.59 +2.4
1,233,781 - +0.4
1,233,811 + +0.1
1,233,819 - -0.2
1,233,824 + -0.9
1,233,841 + +0.0
1,233,853 + -2.1
1,233,853 + -2.6
1,233,853 + -1.2
1,233,853 + +0.0
1,233,861 - CCNA_01130 0.10 +2.4
1,233,883 + CCNA_01130 0.13 -3.9
1,233,927 - CCNA_01130 0.19 +1.8
1,233,933 + CCNA_01130 0.20 -1.8
1,233,947 + CCNA_01130 0.21 -0.8
1,233,952 + CCNA_01130 0.22 -2.6
1,233,963 + CCNA_01130 0.24 -2.1
1,233,963 + CCNA_01130 0.24 -2.3
1,233,963 + CCNA_01130 0.24 -0.5
1,233,963 + CCNA_01130 0.24 -0.7
1,233,963 + CCNA_01130 0.24 -0.6
1,233,963 + CCNA_01130 0.24 -3.0
1,233,963 + CCNA_01130 0.24 -0.2
1,233,963 + CCNA_01130 0.24 -0.2
1,233,963 + CCNA_01130 0.24 +0.0
1,233,963 + CCNA_01130 0.24 -0.6
1,233,963 + CCNA_01130 0.24 -0.3
1,233,963 + CCNA_01130 0.24 -2.2
1,233,963 + CCNA_01130 0.24 -1.1
1,233,963 + CCNA_01130 0.24 -1.7
1,233,971 - CCNA_01130 0.25 +2.4
1,233,971 - CCNA_01130 0.25 +1.4
1,233,971 - CCNA_01130 0.25 +2.4
1,233,971 - CCNA_01130 0.25 +0.8
1,233,976 - CCNA_01130 0.25 +1.4
1,233,977 + CCNA_01130 0.25 -0.4
1,234,005 + CCNA_01130 0.29 -0.2
1,234,013 + CCNA_01130 0.30 -1.8
1,234,021 - CCNA_01130 0.31 -0.2
1,234,021 - CCNA_01130 0.31 +0.8
1,234,051 + CCNA_01130 0.35 -0.9
1,234,051 + CCNA_01130 0.35 +0.4
1,234,051 + CCNA_01130 0.35 +0.0
1,234,107 + CCNA_01130 0.43 -0.6
1,234,119 + CCNA_01130 0.44 -1.3
1,234,125 - CCNA_01130 0.45 -0.2
1,234,130 - CCNA_01130 0.46 +0.0
1,234,205 - CCNA_01130 0.56 +0.0
1,234,279 - CCNA_01130 0.65 +0.0
1,234,279 - CCNA_01130 0.65 -0.4
1,234,290 + CCNA_01130 0.67 -2.0
1,234,315 + CCNA_01130 0.70 -1.1
1,234,317 + CCNA_01130 0.70 -2.7
1,234,325 - CCNA_01130 0.71 -1.2
1,234,325 - CCNA_01130 0.71 +0.8
1,234,325 - CCNA_01130 0.71 +2.4
1,234,375 - CCNA_01130 0.78 +1.4
1,234,385 + CCNA_01130 0.79 -1.3
1,234,385 + CCNA_01130 0.79 -1.7
1,234,385 + CCNA_01130 0.79 +0.7
1,234,390 + CCNA_01130 0.80 -1.7
1,234,393 - CCNA_01130 0.80 +0.8
1,234,412 + CCNA_01130 0.83 +0.2
1,234,421 + CCNA_01130 0.84 -3.2
1,234,463 + CCNA_01130 0.90 -0.9
1,234,495 + -0.9
1,234,495 + -0.4
1,234,495 + -0.6
1,234,495 + -0.4
1,234,495 + -0.3
1,234,495 + -0.5
1,234,495 + -0.0
1,234,495 + -0.4
1,234,495 + -1.0
1,234,503 - -0.4
1,234,503 - -1.0
1,234,503 - +1.4
1,234,503 - -1.3
1,234,503 - -1.1
1,234,503 - +1.4
1,234,520 + +1.4
1,234,520 + -0.0
1,234,520 + +1.6
1,234,528 - +0.0
1,234,544 - -1.2
1,234,581 + -1.3
1,234,595 + -2.0
1,234,603 + -0.6
1,234,603 + -0.5
1,234,730 + CCNA_01131 0.17 -1.1
1,234,738 - CCNA_01131 0.17 +1.4
1,234,798 + CCNA_01131 0.23 +0.4
1,234,837 + CCNA_01131 0.26 +0.0
1,234,845 - CCNA_01131 0.27 +2.4
1,234,845 - CCNA_01131 0.27 +2.4
1,234,845 - CCNA_01131 0.27 +1.4
1,234,845 - CCNA_01131 0.27 +0.0
1,234,870 + CCNA_01131 0.29 +0.2
1,234,894 + CCNA_01131 0.32 -2.3
1,234,897 - CCNA_01131 0.32 +0.4
1,234,912 + CCNA_01131 0.33 -1.5
1,234,932 + CCNA_01131 0.35 -1.3
1,234,942 + CCNA_01131 0.36 -1.4
1,234,949 + CCNA_01131 0.37 -2.1
1,234,949 + CCNA_01131 0.37 -2.4
1,234,949 + CCNA_01131 0.37 -4.4
1,234,950 - CCNA_01131 0.37 +1.4
1,234,950 - CCNA_01131 0.37 +1.4
1,234,950 - CCNA_01131 0.37 +1.4
1,234,957 - CCNA_01131 0.37 -0.2
1,234,957 - CCNA_01131 0.37 -0.6
1,234,977 + CCNA_01131 0.39 -2.7
1,234,980 - CCNA_01131 0.40 +1.4
1,234,981 + CCNA_01131 0.40 +0.0
1,235,050 + CCNA_01131 0.46 -1.0
1,235,119 + CCNA_01131 0.52 -2.0
1,235,119 + +1.4
1,235,119 + CCNA_01131 0.52 -1.6
1,235,119 + CCNA_01131 0.52 -1.1
1,235,119 + CCNA_01131 0.52 -1.3
1,235,119 + CCNA_01131 0.52 -1.4
1,235,119 + CCNA_01131 0.52 -1.0
1,235,119 + CCNA_01131 0.52 -3.5
1,235,147 - CCNA_01131 0.55 +1.4
1,235,163 + CCNA_01131 0.56 -2.7
1,235,168 + CCNA_01131 0.57 -1.4
1,235,221 - CCNA_01131 0.62 -0.4
1,235,228 - CCNA_01131 0.62 -3.5
1,235,240 - CCNA_01131 0.64 -1.7
1,235,241 + CCNA_01131 0.64 -0.4
1,235,241 + CCNA_01131 0.64 -1.1
1,235,241 + CCNA_01131 0.64 +0.4
1,235,251 + CCNA_01131 0.65 -2.6
1,235,290 + CCNA_01131 0.68 -0.4
1,235,332 + CCNA_01131 0.72 -1.7
1,235,365 + CCNA_01131 0.75 -1.2
1,235,370 + CCNA_01131 0.76 -1.2
1,235,385 + CCNA_01131 0.77 -0.8
1,235,394 - CCNA_01131 0.78 +1.4
1,235,455 - CCNA_01131 0.83 +0.4
1,235,516 + CCNA_01131 0.89 -0.6
1,235,524 - CCNA_01131 0.90 +1.4
1,235,524 - CCNA_01131 0.90 -0.2
1,235,524 - CCNA_01131 0.90 -0.4
1,235,552 + -0.9
1,235,586 + -0.1
1,235,609 + +0.0
1,235,656 + +0.2
1,235,664 - +0.0
1,235,723 + +0.3
1,235,724 + +0.4
1,235,758 + +0.6
1,235,773 - -0.6
1,235,893 + -2.6

Or see this region's nucleotide sequence